Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.42664 * 2 1 4 4 O 1.44428 * 110.37157 * 237.68522 * 2 1 3 5 5 C 1.44425 * 105.27590 * 200.66062 * 4 2 1 6 6 C 1.54485 * 104.80378 * 40.51094 * 5 4 2 7 7 C 1.54479 * 110.37100 * 122.30691 * 2 1 3 8 8 C 1.53000 * 110.51252 * 24.02513 * 7 2 1 9 9 C 1.50703 * 110.51395 * 261.45298 * 7 2 1 10 10 O 1.21293 * 119.99482 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 7 2 12 12 C 1.37092 * 119.99729 * 180.27555 * 11 9 7 13 13 H 1.08002 * 120.00496 * 359.72414 * 12 11 9 14 14 C 1.38958 * 120.00096 * 179.72242 * 12 11 9 15 15 N 1.31414 * 119.99347 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47201 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47346 * 119.99877 * 16 14 12 19 19 H 1.48506 * 109.46753 * 239.99977 * 16 14 12 20 20 H 1.09004 * 109.46699 * 297.69373 * 1 2 3 21 21 H 1.09000 * 109.47066 * 57.69318 * 1 2 3 22 22 H 1.08992 * 109.47382 * 177.69429 * 1 2 3 23 23 H 1.08994 * 110.37246 * 159.34630 * 5 4 2 24 24 H 1.09000 * 110.37274 * 281.68520 * 5 4 2 25 25 H 1.09000 * 110.51390 * 217.37827 * 6 5 4 26 26 H 1.08992 * 110.50884 * 94.66941 * 6 5 4 27 27 H 1.09000 * 109.47019 * 298.09518 * 8 7 2 28 28 H 1.09004 * 109.47206 * 58.09845 * 8 7 2 29 29 H 1.08999 * 109.47613 * 178.09584 * 8 7 2 30 30 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 31 31 H 0.97004 * 119.99790 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0327 -0.7238 -1.1443 5 6 3.3873 -1.0873 -0.7994 6 6 3.3177 -1.5058 0.6860 7 6 2.0677 -0.7740 1.2240 8 6 1.0274 -1.7792 1.7221 9 6 2.4482 0.1802 2.3267 10 8 2.3105 1.3749 2.1691 11 7 2.9424 -0.2940 3.4875 12 6 3.2832 0.5737 4.4927 13 1 3.1599 1.6375 4.3527 14 6 3.7873 0.0846 5.6916 15 7 3.9368 -1.2098 5.8621 16 14 4.2510 1.2668 7.0615 17 1 3.9886 2.6609 6.6222 18 1 3.4408 0.9672 8.2694 19 1 5.6928 1.1123 7.3817 20 1 -0.3633 0.4776 0.9100 21 1 -0.3633 0.5492 -0.8686 22 1 -0.3634 -1.0267 -0.0413 23 1 3.7241 -1.9224 -1.4135 24 1 4.0525 -0.2326 -0.9220 25 1 4.2108 -1.1774 1.2176 26 1 3.1954 -2.5853 0.7733 27 1 0.1313 -1.2468 2.0410 28 1 0.7733 -2.4683 0.9166 29 1 1.4363 -2.3387 2.5634 30 1 3.0528 -1.2494 3.6133 31 1 4.2891 -1.5513 6.6989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307564097.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = -116.428846 kcal Electronic energy + Delta-G solvation = -14908.368972 eV Core-core repulsion = 12381.455556 eV Total energy + Delta-G solvation = -2526.913416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56298 -39.21120 -36.05700 -34.76936 -33.27003 -32.35260 -28.78188 -27.26845 -26.08115 -23.27864 -22.57455 -20.28099 -19.72266 -17.99307 -17.07827 -16.67370 -16.32784 -16.09288 -15.55331 -15.28643 -15.16407 -14.38737 -13.60047 -13.53035 -13.44762 -13.17542 -12.95226 -12.74455 -12.50396 -12.39547 -12.16808 -12.14239 -11.72470 -11.58684 -11.54795 -10.73675 -10.24801 -10.06113 -8.50730 -5.99998 1.33769 1.40116 1.54095 1.96941 2.26529 2.82988 3.12944 3.17709 3.61171 3.72912 3.91176 4.18371 4.25693 4.37072 4.44506 4.60412 4.65760 4.69725 4.84217 4.93123 4.99745 5.09279 5.12158 5.15636 5.33642 5.37924 5.83702 5.96978 6.53232 7.06828 7.49869 8.04016 8.66534 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050194 B = 0.008418 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.702731 B = 3325.281673 C = 3432.588183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.054 0.946 4 O -0.379 6.379 5 C 0.047 3.953 6 C -0.142 4.142 7 C -0.100 4.100 8 C -0.128 4.128 9 C 0.450 3.550 10 O -0.635 6.635 11 N -0.561 5.561 12 C -0.338 4.338 13 H 0.078 0.922 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.993 3.007 17 H -0.274 1.274 18 H -0.269 1.269 19 H -0.270 1.270 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.126 0.874 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.397 0.603 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.642 -8.122 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.032 3.968 3 H 0.072 0.928 4 O -0.298 6.298 5 C -0.029 4.029 6 C -0.181 4.181 7 C -0.104 4.104 8 C -0.185 4.185 9 C 0.238 3.762 10 O -0.523 6.523 11 N -0.196 5.196 12 C -0.467 4.467 13 H 0.096 0.904 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.194 1.194 19 H -0.195 1.195 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.144 0.856 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.772 -4.025 -8.241 9.581 hybrid contribution 0.629 0.343 1.182 1.383 sum -2.143 -3.682 -7.059 8.245 Atomic orbital electron populations 1.21802 0.91572 1.03759 1.02281 1.22781 0.96610 0.94516 0.82916 0.92760 1.89041 1.27858 1.74670 1.38234 1.23504 0.84090 1.00718 0.94609 1.23083 0.96122 1.02194 0.96655 1.21968 0.98204 0.95913 0.94287 1.21870 0.97290 0.97538 1.01790 1.20464 0.82343 0.88940 0.84454 1.90469 1.61111 1.18471 1.82228 1.41883 1.55609 1.09695 1.12420 1.19731 1.41599 0.91361 0.94033 0.90365 1.26048 0.96439 0.98209 1.00294 1.69675 1.45322 1.12864 1.27774 0.84878 0.78307 0.77801 0.77402 1.19869 1.19437 1.19481 0.92067 0.91129 0.89751 0.85643 0.93011 0.91871 0.87470 0.92123 0.88904 0.92401 0.76879 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.38 71.98 0.60 -3.41 16 2 C 0.09 3.15 3.19 31.10 0.10 3.25 16 3 H 0.05 2.27 6.90 -2.39 -0.02 2.25 16 4 O -0.38 -12.02 11.34 -148.98 -1.69 -13.71 16 5 C 0.05 1.30 7.63 72.49 0.55 1.85 16 6 C -0.14 -4.40 6.37 31.61 0.20 -4.20 16 7 C -0.10 -3.63 0.81 -51.91 -0.04 -3.67 16 8 C -0.13 -3.88 6.99 71.98 0.50 -3.38 16 9 C 0.45 21.90 6.29 87.66 0.55 22.45 16 10 O -0.63 -35.89 15.02 -3.07 -0.05 -35.94 16 11 N -0.56 -28.98 5.17 -306.98 -1.59 -30.57 16 12 C -0.34 -19.23 9.68 84.04 0.81 -18.41 16 13 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.90 13.05 21.67 0.28 -48.62 16 16 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 20 H 0.06 1.92 7.74 -2.38 -0.02 1.90 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.08 2.09 6.65 -2.39 -0.02 2.08 16 23 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 2.19 7.73 -2.39 -0.02 2.17 16 26 H 0.11 2.70 7.74 -2.39 -0.02 2.68 16 27 H 0.06 1.86 6.82 -2.39 -0.02 1.85 16 28 H 0.09 2.25 7.63 -2.39 -0.02 2.24 16 29 H 0.06 1.80 7.49 -2.39 -0.02 1.78 16 30 H 0.40 19.54 7.22 -92.71 -0.67 18.87 16 31 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -65.37 256.11 3.20 -62.17 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.46 Total: 27.53 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 3.75 Total: -5.55 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.30 Total: -79.18 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -1.74 Total: -49.65 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.37 3.20 -62.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564097.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.261 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds