Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.27901 * 2 1 4 4 C 1.54951 * 110.39210 * 237.85653 * 2 1 3 5 5 C 1.55312 * 100.94225 * 204.59612 * 4 2 1 6 6 H 1.08999 * 110.84840 * 275.94257 * 5 4 2 7 7 N 1.46501 * 110.84796 * 152.31944 * 5 4 2 8 8 C 1.34776 * 119.99743 * 92.17165 * 7 5 4 9 9 O 1.21693 * 119.99670 * 359.97438 * 8 7 5 10 10 C 1.46367 * 120.00162 * 179.97438 * 8 7 5 11 11 H 1.07996 * 120.00003 * 0.02562 * 10 8 7 12 12 C 1.40046 * 120.00262 * 179.97438 * 10 8 7 13 13 N 1.30674 * 120.00048 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00235 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46947 * 60.00437 * 14 12 10 16 16 H 1.48499 * 109.47429 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47197 * 300.00273 * 14 12 10 18 18 C 1.54380 * 102.25056 * 34.13333 * 5 4 2 19 19 H 1.09002 * 109.83458 * 98.15431 * 18 5 4 20 20 C 1.53005 * 109.83249 * 219.13160 * 18 5 4 21 21 O 1.43245 * 107.59000 * 338.64209 * 18 5 4 22 22 H 1.08994 * 109.46746 * 299.36051 * 1 2 3 23 23 H 1.09003 * 109.46604 * 59.36158 * 1 2 3 24 24 H 1.08998 * 109.46750 * 179.35677 * 1 2 3 25 25 H 1.09000 * 111.12523 * 322.51641 * 4 2 1 26 26 H 1.09000 * 111.12500 * 86.63759 * 4 2 1 27 27 H 0.96996 * 120.00263 * 272.16785 * 7 5 4 28 28 H 0.97002 * 120.00148 * 179.97438 * 13 12 10 29 29 H 1.09003 * 109.47160 * 179.58845 * 20 18 5 30 30 H 1.09006 * 109.46508 * 299.58815 * 20 18 5 31 31 H 1.08999 * 109.46794 * 59.58314 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0699 -0.7727 -1.2298 5 6 3.4723 -1.2001 -0.7170 6 1 4.1988 -0.4007 -0.8627 7 7 3.9136 -2.4336 -1.3727 8 6 4.6549 -2.3713 -2.4966 9 8 4.9572 -1.2904 -2.9668 10 6 5.0962 -3.6036 -3.1515 11 1 4.8276 -4.5629 -2.7344 12 6 5.8661 -3.5389 -4.3196 13 7 6.1908 -2.3782 -4.8246 14 14 6.4300 -5.1116 -5.1550 15 1 5.2449 -5.9144 -5.5505 16 1 7.2246 -4.7731 -6.3629 17 1 7.2692 -5.8977 -4.2153 18 6 3.2126 -1.4395 0.7859 19 1 3.0650 -2.5035 0.9708 20 6 4.3991 -0.9281 1.6055 21 8 2.0286 -0.7157 1.1412 22 1 -0.3632 0.5039 0.8956 23 1 -0.3633 0.5237 -0.8843 24 1 -0.3633 -1.0276 -0.0115 25 1 1.4506 -1.6421 -1.4504 26 1 2.1509 -0.1203 -2.0992 27 1 3.6723 -3.2952 -0.9981 28 1 6.7243 -2.3334 -5.6335 29 1 4.2064 -1.0933 2.6656 30 1 5.3014 -1.4647 1.3122 31 1 4.5345 0.1378 1.4225 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307596125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -98.979319 kcal Electronic energy + Delta-G solvation = -14500.883308 eV Core-core repulsion = 11974.726560 eV Total energy + Delta-G solvation = -2526.156748 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56029 -36.96844 -33.47792 -32.49008 -32.27246 -30.14899 -28.17898 -26.12624 -23.54256 -21.24833 -20.41364 -19.58535 -17.39125 -16.30882 -15.60860 -15.27520 -14.43250 -14.07836 -13.78882 -13.51744 -12.74159 -12.59995 -12.44055 -12.29086 -11.97145 -11.58202 -11.44541 -11.16689 -11.03495 -10.78464 -10.51752 -10.47103 -10.35211 -10.22317 -9.28128 -8.87728 -7.67845 -7.56925 -6.22228 -4.68351 3.13936 3.18947 3.20736 3.95537 4.09159 4.52134 4.70647 5.00901 5.05464 5.30637 5.43604 5.44827 5.55474 5.66561 5.74279 5.81240 5.94935 6.02362 6.16188 6.19755 6.29692 6.42039 6.47043 6.64678 7.31383 7.39999 7.86326 8.03573 8.28273 8.98764 9.47191 10.55822 10.73853 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.007273 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.081915 B = 3849.150911 C = 4017.770316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.067 0.933 4 C -0.163 4.163 5 C 0.132 3.868 6 H 0.093 0.907 7 N -0.755 5.755 8 C 0.555 3.445 9 O -0.579 6.579 10 C -0.546 4.546 11 H 0.068 0.932 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.069 3.931 19 H 0.078 0.922 20 C -0.157 4.157 21 O -0.379 6.379 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.381 0.619 28 H 0.269 0.731 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 0.826 8.081 10.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.085 0.915 4 C -0.202 4.202 5 C 0.024 3.976 6 H 0.111 0.889 7 N -0.410 5.410 8 C 0.360 3.640 9 O -0.462 6.462 10 C -0.583 4.583 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C 0.011 3.989 19 H 0.096 0.904 20 C -0.214 4.214 21 O -0.299 6.299 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.213 0.787 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.419 1.744 7.776 10.233 hybrid contribution 0.240 -1.190 -0.454 1.296 sum -6.179 0.553 7.322 9.597 Atomic orbital electron populations 1.21855 0.94132 1.02552 1.01876 1.22896 0.94411 0.95541 0.85521 0.91514 1.23735 0.97762 1.00800 0.97924 1.22039 0.95018 0.91237 0.89298 0.88852 1.46091 1.59444 1.05258 1.30182 1.18231 0.76931 0.90682 0.78171 1.90599 1.59789 1.30842 1.64993 1.20845 1.35200 0.91988 1.10225 0.91425 1.25705 0.94290 0.96791 0.96432 1.70008 1.27500 1.24795 1.17316 0.86423 0.79197 0.82249 0.78817 1.19278 1.20533 1.19257 1.22942 0.85318 0.96017 0.94626 0.90375 1.22084 0.97636 1.01840 0.99862 1.88386 1.42172 1.65032 1.34322 0.92322 0.91419 0.92095 0.90522 0.89960 0.78667 0.92007 0.92424 0.91176 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.63 37.16 0.36 -1.43 16 2 C 0.07 1.10 4.07 -25.70 -0.10 1.00 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.16 -2.84 6.26 -24.48 -0.15 -3.00 16 5 C 0.13 2.55 2.90 -65.98 -0.19 2.36 16 6 H 0.09 2.04 7.26 -51.93 -0.38 1.66 16 7 N -0.75 -16.67 5.18 -53.33 -0.28 -16.94 16 8 C 0.56 15.57 7.75 -12.99 -0.10 15.47 16 9 O -0.58 -18.49 14.66 5.19 0.08 -18.41 16 10 C -0.55 -15.26 9.54 -35.64 -0.34 -15.60 16 11 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 13 N -0.77 -22.87 11.83 55.55 0.66 -22.21 16 14 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 C 0.07 1.13 3.92 -26.01 -0.10 1.02 16 19 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 20 C -0.16 -2.31 9.44 37.16 0.35 -1.96 16 21 O -0.38 -6.17 10.70 -35.23 -0.38 -6.55 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.38 7.43 8.35 -40.82 -0.34 7.09 16 28 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 264.90 15.07 3.99 3.99 Total: -1.00 -32.83 264.90 -5.80 -38.62 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.46 Total: 6.34 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.38 Total: 0.20 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.38 Total: -39.15 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.30 Total: -24.96 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.83 -5.80 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307596125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.359 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds