Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.27901 * 2 1 4 4 C 1.54951 * 110.39210 * 237.85653 * 2 1 3 5 5 C 1.55312 * 100.94225 * 204.59612 * 4 2 1 6 6 H 1.08999 * 110.84840 * 275.94257 * 5 4 2 7 7 N 1.46501 * 110.84796 * 152.31944 * 5 4 2 8 8 C 1.34776 * 119.99743 * 92.17165 * 7 5 4 9 9 O 1.21693 * 119.99670 * 359.97438 * 8 7 5 10 10 C 1.46367 * 120.00162 * 179.97438 * 8 7 5 11 11 H 1.07996 * 120.00003 * 0.02562 * 10 8 7 12 12 C 1.40046 * 120.00262 * 179.97438 * 10 8 7 13 13 N 1.30674 * 120.00048 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00235 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46947 * 60.00437 * 14 12 10 16 16 H 1.48499 * 109.47429 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47197 * 300.00273 * 14 12 10 18 18 C 1.54380 * 102.25056 * 34.13333 * 5 4 2 19 19 H 1.09002 * 109.83458 * 98.15431 * 18 5 4 20 20 C 1.53005 * 109.83249 * 219.13160 * 18 5 4 21 21 O 1.43245 * 107.59000 * 338.64209 * 18 5 4 22 22 H 1.08994 * 109.46746 * 299.36051 * 1 2 3 23 23 H 1.09003 * 109.46604 * 59.36158 * 1 2 3 24 24 H 1.08998 * 109.46750 * 179.35677 * 1 2 3 25 25 H 1.09000 * 111.12523 * 322.51641 * 4 2 1 26 26 H 1.09000 * 111.12500 * 86.63759 * 4 2 1 27 27 H 0.96996 * 120.00263 * 272.16785 * 7 5 4 28 28 H 0.97002 * 120.00148 * 179.97438 * 13 12 10 29 29 H 1.09003 * 109.47160 * 179.58845 * 20 18 5 30 30 H 1.09006 * 109.46508 * 299.58815 * 20 18 5 31 31 H 1.08999 * 109.46794 * 59.58314 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0699 -0.7727 -1.2298 5 6 3.4723 -1.2001 -0.7170 6 1 4.1988 -0.4007 -0.8627 7 7 3.9136 -2.4336 -1.3727 8 6 4.6549 -2.3713 -2.4966 9 8 4.9572 -1.2904 -2.9668 10 6 5.0962 -3.6036 -3.1515 11 1 4.8276 -4.5629 -2.7344 12 6 5.8661 -3.5389 -4.3196 13 7 6.1908 -2.3782 -4.8246 14 14 6.4300 -5.1116 -5.1550 15 1 5.2449 -5.9144 -5.5505 16 1 7.2246 -4.7731 -6.3629 17 1 7.2692 -5.8977 -4.2153 18 6 3.2126 -1.4395 0.7859 19 1 3.0650 -2.5035 0.9708 20 6 4.3991 -0.9281 1.6055 21 8 2.0286 -0.7157 1.1412 22 1 -0.3632 0.5039 0.8956 23 1 -0.3633 0.5237 -0.8843 24 1 -0.3633 -1.0276 -0.0115 25 1 1.4506 -1.6421 -1.4504 26 1 2.1509 -0.1203 -2.0992 27 1 3.6723 -3.2952 -0.9981 28 1 6.7243 -2.3334 -5.6335 29 1 4.2064 -1.0933 2.6656 30 1 5.3014 -1.4647 1.3122 31 1 4.5345 0.1378 1.4225 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307596125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -123.278258 kcal Electronic energy + Delta-G solvation = -14501.936989 eV Core-core repulsion = 11974.726560 eV Total energy + Delta-G solvation = -2527.210429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.99052 -38.97592 -35.28985 -34.46221 -33.63886 -31.73811 -29.53725 -28.11425 -24.92758 -22.77287 -21.83562 -21.43937 -19.27798 -17.89600 -17.23247 -17.06286 -15.91216 -15.87236 -15.29260 -14.99674 -14.40821 -14.23353 -13.81064 -13.71415 -13.41708 -13.00351 -12.80864 -12.77729 -12.66368 -12.58331 -12.16589 -12.06341 -11.89053 -11.75152 -10.92686 -10.54790 -9.89699 -9.49350 -8.30617 -6.87627 1.40342 1.43413 1.55283 2.23476 2.44866 2.65494 3.04450 3.48825 3.73904 3.78777 3.99167 4.05090 4.17833 4.36433 4.43557 4.59579 4.71210 4.84344 4.86821 4.99718 5.03990 5.16604 5.22255 5.29017 5.30825 5.85508 6.01339 6.18624 6.24862 6.85396 7.50463 8.46944 8.65446 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.007273 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.081915 B = 3849.150911 C = 4017.770316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.072 0.928 4 C -0.160 4.160 5 C 0.123 3.877 6 H 0.062 0.938 7 N -0.742 5.742 8 C 0.541 3.459 9 O -0.630 6.630 10 C -0.574 4.574 11 H 0.088 0.912 12 C 0.029 3.971 13 N -0.821 5.821 14 Si 0.998 3.002 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.254 1.254 18 C 0.079 3.921 19 H 0.092 0.908 20 C -0.154 4.154 21 O -0.381 6.381 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.396 0.604 28 H 0.275 0.725 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -0.724 8.926 11.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.090 0.910 4 C -0.199 4.199 5 C 0.016 3.984 6 H 0.080 0.920 7 N -0.396 5.396 8 C 0.346 3.654 9 O -0.517 6.517 10 C -0.611 4.611 11 H 0.107 0.893 12 C -0.186 4.186 13 N -0.451 5.451 14 Si 0.817 3.183 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.178 1.178 18 C 0.021 3.979 19 H 0.110 0.890 20 C -0.211 4.211 21 O -0.301 6.301 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.274 0.179 8.680 11.326 hybrid contribution 0.458 -0.652 -0.668 1.040 sum -6.815 -0.473 8.012 10.530 Atomic orbital electron populations 1.21846 0.91560 1.03118 1.03354 1.22988 0.96355 0.95089 0.83559 0.90983 1.23658 0.96704 1.00966 0.98598 1.22154 0.95186 0.89189 0.91846 0.91986 1.45710 1.58125 1.07007 1.28784 1.18575 0.77249 0.90270 0.79328 1.90556 1.61867 1.32418 1.66839 1.21409 1.35762 0.92791 1.11091 0.89342 1.26967 0.93709 1.01045 0.96869 1.70178 1.28569 1.28148 1.18186 0.85070 0.79067 0.76638 0.77527 1.17846 1.19958 1.17798 1.22858 0.86055 0.96983 0.92043 0.89015 1.22062 0.96633 1.01473 1.00970 1.88385 1.41915 1.65194 1.34602 0.90789 0.90031 0.91993 0.90211 0.91800 0.76974 0.91536 0.90086 0.91883 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.63 71.98 0.69 -2.41 16 2 C 0.08 2.20 4.07 31.26 0.13 2.33 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.16 -5.59 6.26 32.06 0.20 -5.39 16 5 C 0.12 4.83 2.90 46.25 0.13 4.97 16 6 H 0.06 2.83 7.26 -2.39 -0.02 2.81 16 7 N -0.74 -33.06 5.18 -440.84 -2.28 -35.35 16 8 C 0.54 31.12 7.75 86.36 0.67 31.79 16 9 O -0.63 -41.94 14.66 -4.33 -0.06 -42.01 16 10 C -0.57 -32.25 9.54 24.83 0.24 -32.01 16 11 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 12 C 0.03 1.63 5.50 85.30 0.47 2.10 16 13 N -0.82 -50.14 11.83 21.84 0.26 -49.88 16 14 Si 1.00 40.54 29.56 68.60 2.03 42.57 16 15 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 18 C 0.08 2.46 3.92 31.06 0.12 2.58 16 19 H 0.09 2.64 7.71 -2.39 -0.02 2.62 16 20 C -0.15 -4.35 9.44 71.98 0.68 -3.67 16 21 O -0.38 -11.59 10.70 -148.98 -1.59 -13.19 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 25 H 0.08 2.71 8.06 -2.39 -0.02 2.69 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.40 15.18 8.35 -92.71 -0.77 14.40 16 28 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.34 264.90 2.02 -70.32 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.34 Total: 27.25 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 3.33 Total: 0.29 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.03 Total: -85.23 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -1.66 Total: -55.19 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -72.34 2.02 -70.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307596125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.959 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds