Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58384 * 2 1 4 4 C 1.53190 * 109.58665 * 120.42382 * 2 1 3 5 5 C 1.53043 * 109.31235 * 174.42171 * 4 2 1 6 6 C 1.53075 * 109.65908 * 298.69996 * 5 4 2 7 7 H 1.08993 * 109.61960 * 181.16665 * 6 5 4 8 8 O 1.42894 * 109.39071 * 301.27838 * 6 5 4 9 9 C 1.53196 * 109.29218 * 61.15236 * 6 5 4 10 10 N 1.46925 * 108.89383 * 305.57549 * 9 6 5 11 11 C 1.34770 * 120.62959 * 233.51543 * 10 9 6 12 12 O 1.21698 * 119.99834 * 174.98672 * 11 10 9 13 13 C 1.46371 * 120.00318 * 354.98565 * 11 10 9 14 14 H 1.07995 * 119.99745 * 6.82927 * 13 11 10 15 15 C 1.40050 * 120.00078 * 186.82996 * 13 11 10 16 16 N 1.30671 * 119.99848 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00023 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47294 * 89.99510 * 17 15 13 19 19 H 1.48500 * 109.47135 * 209.99998 * 17 15 13 20 20 H 1.48501 * 109.47017 * 329.99828 * 17 15 13 21 21 H 1.09005 * 109.46928 * 176.50907 * 1 2 3 22 22 H 1.09002 * 109.47193 * 296.50639 * 1 2 3 23 23 H 1.09000 * 109.47367 * 56.50543 * 1 2 3 24 24 H 1.09005 * 109.49992 * 294.37326 * 4 2 1 25 25 H 1.09001 * 109.49663 * 54.47282 * 4 2 1 26 26 H 1.09001 * 109.45848 * 58.65922 * 5 4 2 27 27 H 1.08998 * 109.46151 * 178.62795 * 5 4 2 28 28 H 0.96704 * 114.00035 * 179.74910 * 8 6 5 29 29 H 1.09003 * 109.58375 * 185.71831 * 9 6 5 30 30 H 1.08996 * 109.58779 * 65.43715 * 9 6 5 31 31 H 0.97003 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8494 1.1691 6 6 3.9602 -1.6641 -0.0659 7 1 5.0446 -1.7657 -0.1077 8 8 3.3617 -2.9594 0.0103 9 6 3.4650 -0.9453 -1.3249 10 7 2.0225 -0.6981 -1.1953 11 6 1.1675 -1.1036 -2.1549 12 8 -0.0321 -0.9752 -1.9949 13 6 1.6815 -1.6984 -3.3896 14 1 2.7353 -1.9139 -3.4871 15 6 0.8070 -1.9879 -4.4444 16 7 -0.4681 -1.7276 -4.3261 17 14 1.4629 -2.7477 -6.0198 18 1 1.4235 -4.2280 -5.9093 19 1 0.6232 -2.3143 -7.1654 20 1 2.8635 -2.3047 -6.2372 21 1 -0.3633 -1.0258 -0.0626 22 1 -0.3634 0.4586 0.9197 23 1 -0.3634 0.5671 -0.8570 24 1 1.7660 -0.1694 2.1367 25 1 1.6030 -1.7269 1.2892 26 1 4.0062 0.1461 1.0995 27 1 3.9378 -1.3475 2.0651 28 1 3.5643 -3.5312 -0.7428 29 1 3.6518 -1.5691 -2.1991 30 1 3.9900 0.0036 -1.4342 31 1 -1.0738 -1.9278 -5.0569 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307614195.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = -102.464071 kcal Electronic energy + Delta-G solvation = -15227.569793 eV Core-core repulsion = 12701.261936 eV Total energy + Delta-G solvation = -2526.307858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74660 -38.28376 -36.12157 -34.59980 -33.46752 -32.14603 -28.55959 -27.65395 -25.20497 -23.25529 -21.75640 -20.45587 -18.70517 -17.67146 -17.22688 -16.46431 -16.11606 -15.70262 -15.34839 -14.99428 -14.60917 -14.17850 -13.55641 -13.51472 -13.03468 -12.91988 -12.82056 -12.74449 -12.46682 -12.16687 -12.00327 -11.84168 -11.66169 -11.23848 -10.90484 -10.81699 -9.19349 -8.83650 -8.17069 -6.76916 1.40105 1.41496 1.55619 2.24962 2.52984 2.87549 3.50809 3.71091 3.92081 4.01223 4.10474 4.23690 4.43530 4.50167 4.71970 4.87036 4.88944 4.93330 4.98832 5.02792 5.16782 5.29004 5.42103 5.55103 5.65045 5.82023 6.21255 6.51730 6.93644 6.96941 7.53892 8.56798 8.75644 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.011475 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.881968 B = 2439.445662 C = 2958.614161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.106 4.106 6 C 0.089 3.911 7 H 0.091 0.909 8 O -0.581 6.581 9 C 0.083 3.917 10 N -0.634 5.634 11 C 0.541 3.459 12 O -0.614 6.614 13 C -0.570 4.570 14 H 0.091 0.909 15 C 0.030 3.970 16 N -0.825 5.825 17 Si 0.992 3.008 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.247 1.247 21 H 0.030 0.970 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.384 0.616 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.522 0.858 5.898 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.155 4.155 5 C -0.143 4.143 6 C 0.030 3.970 7 H 0.109 0.891 8 O -0.388 6.388 9 C -0.040 4.040 10 N -0.371 5.371 11 C 0.347 3.653 12 O -0.501 6.501 13 C -0.606 4.606 14 H 0.109 0.891 15 C -0.185 4.185 16 N -0.455 5.455 17 Si 0.812 3.188 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.170 1.170 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.233 0.767 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.477 1.189 6.490 12.381 hybrid contribution -0.107 -0.527 -1.353 1.456 sum 10.370 0.663 5.137 11.592 Atomic orbital electron populations 1.21805 0.95194 1.00896 0.98472 1.21097 0.94130 0.94824 0.86028 0.91939 1.21801 0.96879 0.99892 0.96959 1.21549 0.95187 1.00328 0.97284 1.22370 0.96544 0.83052 0.95056 0.89131 1.86459 1.77424 1.25910 1.49027 1.22400 0.81543 1.00752 0.99344 1.47929 1.06953 1.61624 1.20593 1.18566 0.85176 0.77991 0.83606 1.90610 1.17484 1.61504 1.80465 1.21510 0.96111 1.43946 0.99053 0.89124 1.26919 0.94316 0.93715 1.03518 1.70193 1.05109 1.37655 1.32568 0.85106 0.79447 0.78680 0.75596 1.18887 1.20270 1.16977 0.95098 0.93258 0.94829 0.89664 0.94194 0.88687 0.90237 0.76722 0.89747 0.91161 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.91 7.59 71.98 0.55 -4.37 16 2 C 0.14 5.75 3.49 44.97 0.16 5.91 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -3.83 5.23 30.67 0.16 -3.67 16 5 C -0.11 -2.75 5.63 30.63 0.17 -2.58 16 6 C 0.09 2.51 3.82 30.68 0.12 2.63 16 7 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 8 O -0.58 -19.40 12.52 -148.98 -1.87 -21.27 16 9 C 0.08 2.89 5.95 86.36 0.51 3.40 16 10 N -0.63 -28.96 2.92 -800.07 -2.34 -31.30 16 11 C 0.54 31.36 7.53 86.36 0.65 32.01 16 12 O -0.61 -40.46 10.45 -4.34 -0.05 -40.50 16 13 C -0.57 -31.75 8.86 24.83 0.22 -31.53 16 14 H 0.09 4.46 5.68 -2.91 -0.02 4.44 16 15 C 0.03 1.65 5.50 85.30 0.47 2.12 16 16 N -0.83 -50.79 11.85 21.84 0.26 -50.53 16 17 Si 0.99 40.77 29.56 68.60 2.03 42.80 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 21 H 0.03 1.64 6.77 -2.38 -0.02 1.62 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.03 1.76 6.72 -2.39 -0.02 1.75 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.04 1.57 7.62 -2.39 -0.02 1.55 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.38 10.81 9.08 -74.05 -0.67 10.14 16 29 H 0.08 3.06 5.37 -2.39 -0.01 3.04 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 Total: -1.00 -76.01 248.75 1.51 -74.50 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.46 Total: 22.37 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 3.01 Total: 3.93 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.08 Total: -81.83 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -1.91 Total: -61.77 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -76.01 1.51 -74.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307614195.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.961 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds