Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46840 * 2 1 4 4 C 1.50697 * 109.47293 * 239.99290 * 2 1 3 5 5 H 1.07997 * 120.00222 * 239.99934 * 4 2 1 6 6 C 1.37882 * 119.99390 * 60.00218 * 4 2 1 7 7 N 1.31509 * 120.00360 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99456 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46955 * 90.00028 * 8 6 4 10 10 H 1.48497 * 109.46605 * 209.99787 * 8 6 4 11 11 H 1.48497 * 109.47098 * 329.99952 * 8 6 4 12 12 N 1.46508 * 109.47197 * 119.99318 * 2 1 3 13 13 C 1.46498 * 119.99430 * 60.00002 * 12 2 1 14 14 C 1.34772 * 120.00083 * 240.00144 * 12 2 1 15 15 O 1.21277 * 120.00139 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99884 * 179.97438 * 14 12 2 17 17 H 1.09001 * 112.71026 * 63.96575 * 16 14 12 18 18 C 1.53366 * 113.39273 * 293.42048 * 16 14 12 19 19 C 1.53367 * 81.26077 * 271.58755 * 18 16 14 20 20 O 1.43354 * 113.39222 * 194.50452 * 16 14 12 21 21 H 1.09002 * 109.47136 * 300.00026 * 1 2 3 22 22 H 1.08998 * 109.47187 * 60.00202 * 1 2 3 23 23 H 1.09001 * 109.46563 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99905 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47618 * 269.99796 * 13 12 2 26 26 H 1.08999 * 109.47482 * 30.00296 * 13 12 2 27 27 H 1.09006 * 109.46839 * 150.00106 * 13 12 2 28 28 H 1.09002 * 114.56333 * 158.49602 * 18 16 14 29 29 H 1.08995 * 114.60960 * 24.68092 * 18 16 14 30 30 H 1.09006 * 113.39116 * 218.62043 * 19 18 16 31 31 H 1.08992 * 113.39243 * 88.41063 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4873 -0.1406 -5.1119 11 1 3.6309 -1.7568 -3.7117 12 7 2.0184 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 6 2.7932 -0.0354 2.0834 15 8 3.0858 1.1258 1.8916 16 6 3.2951 -0.7456 3.3142 17 1 3.9648 -1.5728 3.0791 18 6 2.1793 -1.1253 4.2956 19 6 2.4843 0.2822 4.8228 20 8 3.8162 0.1429 4.3112 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.7082 1.1606 -3.4845 25 1 0.7376 -2.1443 1.9995 26 1 1.5295 -2.5968 0.4711 27 1 2.4629 -2.5817 1.9866 28 1 2.4353 -1.9319 4.9826 29 1 1.1943 -1.2358 3.8422 30 1 2.4437 0.3554 5.9097 31 1 1.9097 1.0641 4.3265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308251483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = -39.581540 kcal Electronic energy + Delta-G solvation = -14863.264244 eV Core-core repulsion = 12339.683177 eV Total energy + Delta-G solvation = -2523.581067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09429 -38.13836 -35.31455 -32.93936 -30.35789 -29.11950 -26.68043 -26.06960 -25.23840 -22.40634 -20.46278 -18.32221 -16.98992 -16.57300 -16.08546 -15.87984 -15.25976 -14.75781 -14.07006 -13.76986 -12.78196 -12.67153 -12.46408 -12.41069 -11.68318 -11.55274 -11.10638 -10.97505 -10.85040 -10.75912 -10.70369 -10.33636 -10.21497 -10.19328 -9.20548 -8.73061 -8.44081 -7.65230 -6.09672 -4.17982 3.17588 3.25105 3.32554 3.35478 3.72037 4.09109 4.25509 4.37645 4.93064 5.06729 5.21705 5.35614 5.46347 5.62823 5.68309 5.90199 5.93363 5.96728 6.09905 6.32683 6.71538 6.79026 7.02314 7.37032 7.49089 7.68267 7.98389 8.16198 8.45711 8.79345 8.98350 9.48501 10.95691 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052298 B = 0.008293 C = 0.008237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.267808 B = 3375.687865 C = 3398.381314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.586 5.586 13 C 0.082 3.918 14 C 0.494 3.506 15 O -0.537 6.537 16 C 0.042 3.958 17 H 0.117 0.883 18 C -0.178 4.178 19 C 0.027 3.973 20 O -0.345 6.345 21 H 0.010 0.990 22 H 0.094 0.906 23 H 0.030 0.970 24 H 0.264 0.736 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 -6.792 10.495 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.062 4.062 14 C 0.279 3.721 15 O -0.415 6.415 16 C -0.020 4.020 17 H 0.134 0.866 18 C -0.216 4.216 19 C -0.050 4.050 20 O -0.262 6.262 21 H 0.029 0.971 22 H 0.112 0.888 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.510 -5.930 10.304 11.900 hybrid contribution 0.173 -0.652 -0.941 1.157 sum -0.337 -6.582 9.364 11.451 Atomic orbital electron populations 1.22078 0.98036 0.99427 1.00828 1.18981 0.90949 0.94587 0.79823 0.91907 1.21309 1.31951 1.13081 0.90261 0.92173 1.24902 0.94925 0.94958 0.99007 1.69876 1.36280 1.22543 1.23821 0.86476 0.79191 0.79284 0.82339 1.20589 1.21066 1.19911 1.48229 1.48626 1.11687 1.23386 1.21674 0.98769 0.83212 1.02541 1.20416 0.79836 0.87405 0.84411 1.90683 1.57602 1.16806 1.76386 1.22978 0.96310 0.92735 0.90001 0.86569 1.24359 1.00197 0.98833 0.98163 1.23630 0.84285 0.96659 1.00385 1.89927 1.24129 1.68059 1.44066 0.97054 0.88772 0.95097 0.92632 0.93655 0.89884 0.92828 0.87753 0.89371 0.89508 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.54 2.64 -69.08 -0.18 6.36 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.18 7.99 -34.44 -0.28 -14.46 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.59 -12.38 2.75 -175.26 -0.48 -12.87 16 13 C 0.08 1.31 8.26 59.85 0.49 1.80 16 14 C 0.49 10.53 6.54 -10.99 -0.07 10.46 16 15 O -0.54 -14.00 16.05 -11.00 -0.18 -14.18 16 16 C 0.04 0.67 3.65 -40.44 -0.15 0.53 16 17 H 0.12 1.62 7.69 -51.93 -0.40 1.22 16 18 C -0.18 -2.13 7.51 -26.35 -0.20 -2.33 16 19 C 0.03 0.38 8.39 24.60 0.21 0.59 16 20 O -0.34 -6.06 12.30 -51.79 -0.64 -6.70 16 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 23 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.04 0.62 7.38 -51.93 -0.38 0.24 16 26 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 27 H 0.05 0.69 6.49 -51.93 -0.34 0.35 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.03 6.73 -51.93 -0.35 0.68 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.28 7.82 -51.93 -0.41 0.87 16 LS Contribution 256.37 15.07 3.86 3.86 Total: -1.00 -32.04 256.37 -5.86 -37.90 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.10 Total: -1.04 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.06 Total: 1.52 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.14 Total: -37.30 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.81 Total: -20.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.04 -5.86 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308251483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.678 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds