Wall clock time and date at job start Mon Mar 30 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.72545 * 2 1 4 4 C 1.54936 * 110.66966 * 236.90366 * 2 1 3 5 5 C 1.54598 * 102.92332 * 204.15195 * 4 2 1 6 6 C 1.53992 * 105.13728 * 21.96021 * 5 4 2 7 7 N 1.47902 * 107.05749 * 1.22183 * 6 5 4 8 8 C 1.46907 * 110.99686 * 214.15638 * 7 6 5 9 9 C 1.50699 * 109.47185 * 294.27707 * 8 7 6 10 10 O 1.21210 * 120.00267 * 353.79904 * 9 8 7 11 11 O 1.34314 * 119.99949 * 173.79973 * 9 8 7 12 12 C 1.34921 * 116.99757 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00620 * 0.02562 * 12 11 9 14 14 C 1.38753 * 119.99598 * 180.02562 * 12 11 9 15 15 N 1.31447 * 120.00331 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99846 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46967 * 180.02562 * 16 14 12 18 18 H 1.48495 * 109.46933 * 300.00115 * 16 14 12 19 19 H 1.48504 * 109.46889 * 60.00096 * 16 14 12 20 20 H 1.08997 * 109.47162 * 296.90419 * 1 2 3 21 21 H 1.09006 * 109.46632 * 56.90105 * 1 2 3 22 22 H 1.08998 * 109.47108 * 176.90319 * 1 2 3 23 23 H 1.09002 * 110.72592 * 85.79292 * 4 2 1 24 24 H 1.08999 * 110.87567 * 322.58656 * 4 2 1 25 25 H 1.08994 * 110.30822 * 263.03816 * 5 4 2 26 26 H 1.09005 * 110.30240 * 140.87136 * 5 4 2 27 27 H 1.09004 * 109.91441 * 241.86975 * 6 5 4 28 28 H 1.08999 * 110.08097 * 120.67079 * 6 5 4 29 29 H 1.09002 * 109.46983 * 174.27458 * 8 7 6 30 30 H 1.08999 * 109.47308 * 54.27469 * 8 7 6 31 31 H 0.96998 * 120.00419 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2144 5 6 3.4854 -1.2197 -0.7422 6 6 3.4278 -1.1648 0.7957 7 7 2.0542 -0.7589 1.1642 8 6 2.0579 0.0719 2.3758 9 6 2.5225 -0.7524 3.5487 10 8 2.7130 -1.9420 3.4159 11 8 2.7254 -0.1688 4.7413 12 6 3.1404 -0.9636 5.7494 13 1 3.2950 -2.0185 5.5769 14 6 3.3687 -0.4258 7.0079 15 7 3.1801 0.8580 7.2181 16 14 3.9441 -1.5261 8.4036 17 1 4.1129 -0.7149 9.6359 18 1 2.9346 -2.5880 8.6450 19 1 5.2415 -2.1500 8.0393 20 1 -0.3633 0.4650 0.9164 21 1 -0.3633 0.5612 -0.8610 22 1 -0.3633 -1.0261 -0.0555 23 1 2.1431 -0.1513 -2.0941 24 1 1.4571 -1.6643 -1.4202 25 1 4.2374 -0.5259 -1.1178 26 1 3.7044 -2.2338 -1.0766 27 1 4.1440 -0.4323 1.1681 28 1 3.6498 -2.1466 1.2138 29 1 1.0500 0.4402 2.5669 30 1 2.7327 0.9163 2.2352 31 1 3.3393 1.2340 8.0980 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308266260.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:31 Heat of formation + Delta-G solvation = -77.556501 kcal Electronic energy + Delta-G solvation = -14396.890621 eV Core-core repulsion = 11871.662837 eV Total energy + Delta-G solvation = -2525.227784 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42693 -38.23354 -35.02598 -32.15777 -31.93431 -31.22980 -26.91561 -25.42237 -24.65199 -21.08290 -20.27721 -19.54440 -17.64138 -16.36462 -16.07028 -15.16061 -14.66037 -14.55155 -14.24575 -13.89371 -13.28273 -12.93474 -12.39767 -12.04399 -11.84265 -11.68334 -11.37372 -11.24973 -11.03768 -10.93158 -10.66434 -10.45681 -10.42509 -10.19797 -9.75855 -8.89808 -8.51898 -8.08933 -6.35372 -4.03111 3.17463 3.21470 3.25687 3.62134 3.82009 4.19265 4.62904 4.72084 4.97145 5.10647 5.17263 5.31107 5.46629 5.58084 5.67338 5.71734 5.84832 5.89413 5.91320 6.02120 6.11803 6.27034 6.33781 6.47958 6.71050 7.18475 7.30818 7.46394 8.02124 8.81394 9.13789 9.94715 10.83076 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060938 B = 0.006751 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.376140 B = 4146.764971 C = 4366.582075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.052 0.948 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.039 3.961 7 N -0.495 5.495 8 C 0.065 3.935 9 C 0.400 3.600 10 O -0.538 6.538 11 O -0.221 6.221 12 C -0.380 4.380 13 H 0.094 0.906 14 C 0.041 3.959 15 N -0.869 5.869 16 Si 0.943 3.057 17 H -0.279 1.279 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 0.302 -13.203 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 H 0.070 0.930 4 C -0.154 4.154 5 C -0.169 4.169 6 C -0.088 4.088 7 N -0.221 5.221 8 C -0.064 4.064 9 C 0.245 3.755 10 O -0.434 6.434 11 O -0.128 6.128 12 C -0.456 4.456 13 H 0.112 0.888 14 C -0.163 4.163 15 N -0.507 5.507 16 Si 0.768 3.232 17 H -0.204 1.204 18 H -0.195 1.195 19 H -0.196 1.196 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.087 -0.295 -12.900 13.071 hybrid contribution 0.810 0.303 0.659 1.087 sum -1.277 0.007 -12.241 12.308 Atomic orbital electron populations 1.21687 0.93821 1.02506 1.01368 1.22802 0.96121 0.95716 0.90418 0.92982 1.22499 0.96301 1.00011 0.96606 1.22420 0.97077 1.01748 0.95696 1.22878 0.89133 1.02607 0.94231 1.64471 1.19907 1.36415 1.01276 1.21538 1.02686 0.93771 0.88436 1.22953 0.79794 0.87535 0.85211 1.90540 1.51418 1.16734 1.84664 1.83871 1.71078 1.41075 1.16796 1.21144 1.45142 0.92680 0.86660 0.88828 1.25314 0.96777 0.96510 0.97667 1.69986 1.46064 1.11288 1.23343 0.85750 0.79409 0.79010 0.79017 1.20429 1.19516 1.19565 0.92476 0.92503 0.91757 0.91366 0.90673 0.91833 0.91118 0.94131 0.89049 0.87965 0.92095 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.50 37.16 0.35 -1.26 16 2 C 0.06 0.76 2.92 -65.79 -0.19 0.57 16 3 H 0.05 0.66 8.02 -51.93 -0.42 0.25 16 4 C -0.12 -1.33 6.50 -24.87 -0.16 -1.49 16 5 C -0.13 -1.63 6.93 -25.37 -0.18 -1.81 16 6 C 0.04 0.66 5.66 -2.76 -0.02 0.64 16 7 N -0.49 -8.63 4.69 -224.06 -1.05 -9.68 16 8 C 0.06 1.26 5.28 -4.97 -0.03 1.23 16 9 C 0.40 10.22 7.59 36.00 0.27 10.49 16 10 O -0.54 -14.87 14.27 -19.05 -0.27 -15.14 16 11 O -0.22 -6.51 9.75 -20.71 -0.20 -6.71 16 12 C -0.38 -11.53 9.64 30.92 0.30 -11.23 16 13 H 0.09 2.86 6.86 -52.49 -0.36 2.50 16 14 C 0.04 1.17 5.49 -17.53 -0.10 1.08 16 15 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 16 Si 0.94 21.78 29.55 -169.99 -5.02 16.76 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.69 7.64 -51.93 -0.40 0.30 16 28 H 0.09 1.75 7.32 -51.93 -0.38 1.37 16 29 H 0.10 1.81 7.30 -51.93 -0.38 1.44 16 30 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -33.34 262.19 -5.97 -39.31 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.39 Total: -1.48 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.26 Total: -1.77 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.29 Total: -34.92 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.47 Total: -21.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.34 -5.97 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308266260.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.251 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds