Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 111.00021 * 2 1 4 4 C 1.46902 * 110.99804 * 123.95235 * 2 1 3 5 5 H 1.09000 * 109.47071 * 289.72259 * 4 2 1 6 6 C 1.50705 * 109.47075 * 169.72877 * 4 2 1 7 7 O 1.21210 * 119.99924 * 339.99799 * 6 4 2 8 8 O 1.34305 * 119.99911 * 159.72248 * 6 4 2 9 9 C 1.34917 * 117.00124 * 180.27526 * 8 6 4 10 10 H 1.08000 * 119.99804 * 0.02562 * 9 8 6 11 11 C 1.38758 * 120.00370 * 180.02562 * 9 8 6 12 12 N 1.31441 * 120.00036 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00289 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47407 * 89.99436 * 13 11 9 15 15 H 1.48496 * 109.46946 * 209.99900 * 13 11 9 16 16 H 1.48503 * 109.46815 * 329.99995 * 13 11 9 17 17 C 1.52995 * 109.47134 * 49.72676 * 4 2 1 18 18 C 1.53003 * 117.49939 * 253.39464 * 17 4 2 19 19 C 1.53007 * 117.49815 * 184.73448 * 17 4 2 20 20 H 1.08996 * 109.47591 * 289.76518 * 1 2 3 21 21 H 1.09003 * 109.47409 * 49.76505 * 1 2 3 22 22 H 1.08999 * 109.47095 * 169.75949 * 1 2 3 23 23 H 1.08997 * 109.46752 * 183.95048 * 3 2 1 24 24 H 1.08997 * 109.46388 * 303.95416 * 3 2 1 25 25 H 1.09001 * 109.46866 * 63.95121 * 3 2 1 26 26 H 0.96995 * 120.00427 * 180.02562 * 12 11 9 27 27 H 1.09000 * 115.55236 * 39.06825 * 17 4 2 28 28 H 1.08997 * 117.49810 * 0.02562 * 18 17 4 29 29 H 1.08998 * 117.49824 * 145.02103 * 18 17 4 30 30 H 1.08995 * 117.50146 * 214.97765 * 19 17 4 31 31 H 1.09002 * 117.49526 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.8018 -0.2224 2.0624 6 6 3.4806 -0.9582 0.9696 7 8 3.9869 -0.8404 -0.1254 8 8 4.2440 -1.2547 2.0340 9 6 5.5665 -1.4082 1.8157 10 1 5.9664 -1.2917 0.8192 11 6 6.4130 -1.7157 2.8713 12 7 5.9265 -1.8569 4.0841 13 14 8.2442 -1.9275 2.5690 14 1 8.9269 -0.6184 2.7281 15 1 8.7985 -2.8971 3.5477 16 1 8.4628 -2.4353 1.1908 17 6 1.3076 -2.1314 1.1951 18 6 0.2726 -2.3552 2.2995 19 6 1.6393 -3.0402 2.3805 20 1 -0.3634 0.3475 0.9671 21 1 -0.3634 0.6638 -0.7845 22 1 -0.3633 -1.0113 -0.1827 23 1 3.0827 1.3432 -0.0708 24 1 1.5897 1.9163 -0.8524 25 1 1.7043 1.8724 0.9233 26 1 6.5182 -2.0715 4.8221 27 1 1.1262 -2.6074 0.2314 28 1 0.0815 -1.5296 2.9849 29 1 -0.5894 -2.9787 2.0625 30 1 1.6756 -4.1139 2.1968 31 1 2.3478 -2.6654 3.1192 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308307708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -42.774741 kcal Electronic energy + Delta-G solvation = -14740.170831 eV Core-core repulsion = 12216.451297 eV Total energy + Delta-G solvation = -2523.719534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46495 -37.52518 -35.62304 -34.65509 -32.06337 -28.44511 -27.34271 -25.20147 -22.42687 -21.96230 -21.24040 -19.10515 -17.66874 -16.80174 -15.71997 -15.09982 -14.80827 -14.35274 -14.14160 -13.81046 -13.31609 -13.04448 -12.14217 -12.07060 -11.87965 -11.47998 -11.40627 -11.23151 -11.13155 -10.82595 -10.40329 -10.21897 -10.06998 -9.91928 -9.68991 -8.76671 -8.51373 -7.99145 -6.35614 -4.02389 3.14574 3.21728 3.27745 3.55913 3.80712 4.07645 4.24069 4.82091 5.07185 5.24663 5.31186 5.34791 5.46928 5.49262 5.60791 5.74079 5.81295 5.90252 6.00533 6.05632 6.31750 6.33572 6.40500 6.64914 6.81125 7.29389 7.33702 7.47452 8.02466 8.82315 9.14189 9.96275 10.82746 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038124 B = 0.009420 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.277428 B = 2971.528419 C = 3458.602545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.525 5.525 3 C 0.024 3.976 4 C 0.136 3.864 5 H 0.062 0.938 6 C 0.408 3.592 7 O -0.536 6.536 8 O -0.216 6.216 9 C -0.378 4.378 10 H 0.093 0.907 11 C 0.042 3.958 12 N -0.868 5.868 13 Si 0.940 3.060 14 H -0.274 1.274 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.144 4.144 18 C -0.181 4.181 19 C -0.162 4.162 20 H 0.024 0.976 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.021 0.979 26 H 0.268 0.732 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 1.470 -2.430 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.250 5.250 3 C -0.124 4.124 4 C 0.026 3.974 5 H 0.080 0.920 6 C 0.252 3.748 7 O -0.431 6.431 8 O -0.123 6.123 9 C -0.455 4.455 10 H 0.111 0.889 11 C -0.162 4.162 12 N -0.505 5.505 13 Si 0.765 3.235 14 H -0.200 1.200 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.163 4.163 18 C -0.218 4.218 19 C -0.200 4.200 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.387 1.222 -2.922 9.907 hybrid contribution 0.616 0.312 0.606 0.919 sum -8.771 1.534 -2.316 9.201 Atomic orbital electron populations 1.22356 0.87086 1.02448 0.99838 1.61581 1.07243 1.13804 1.42323 1.22440 1.02385 0.87927 0.99682 1.20541 0.90261 0.93961 0.92627 0.92042 1.22806 0.88933 0.78991 0.84031 1.90545 1.74562 1.50634 1.27353 1.83868 1.20576 1.73125 1.34757 1.21183 0.78792 1.48952 0.96539 0.88887 1.25278 1.00144 0.96378 0.94367 1.69981 1.35876 1.45320 0.99358 0.85719 0.80822 0.78387 0.78556 1.20011 1.20395 1.19148 1.22006 1.02977 0.96056 0.95245 1.23063 0.93314 1.03667 1.01732 1.23082 0.97943 0.98289 1.00654 0.95792 0.91682 0.91046 0.90305 0.91420 0.96029 0.92242 0.86965 0.89076 0.88984 0.88819 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.96 60.06 0.54 0.95 16 2 N -0.52 -9.35 4.54 -244.58 -1.11 -10.46 16 3 C 0.02 0.40 9.25 60.07 0.56 0.95 16 4 C 0.14 2.70 2.18 -68.86 -0.15 2.55 16 5 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 6 C 0.41 10.42 6.16 36.01 0.22 10.64 16 7 O -0.54 -14.98 14.74 -19.05 -0.28 -15.26 16 8 O -0.22 -6.22 9.15 -20.68 -0.19 -6.41 16 9 C -0.38 -11.30 9.65 30.92 0.30 -11.00 16 10 H 0.09 2.83 6.86 -52.49 -0.36 2.47 16 11 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 12 N -0.87 -25.40 13.67 55.48 0.76 -24.64 16 13 Si 0.94 21.60 29.55 -169.99 -5.02 16.57 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.14 -2.49 3.62 -90.62 -0.33 -2.82 16 18 C -0.18 -2.54 10.07 -26.69 -0.27 -2.80 16 19 C -0.16 -2.81 9.90 -26.69 -0.26 -3.08 16 20 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 21 H 0.06 0.75 8.01 -51.93 -0.42 0.34 16 22 H 0.07 0.90 6.98 -51.93 -0.36 0.54 16 23 H 0.08 1.56 6.63 -51.93 -0.34 1.22 16 24 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.11 1.91 7.96 -51.93 -0.41 1.49 16 28 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.11 2.34 7.65 -51.93 -0.40 1.94 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -32.66 267.24 -5.68 -38.34 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.37 Total: 1.36 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 0.51 Total: -3.53 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.35 Total: -35.10 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.47 Total: -21.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.66 -5.68 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308307708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.434 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds