Wall clock time and date at job start Mon Mar 30 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00034 * 2 1 4 4 O 1.20823 * 119.99728 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.52995 * 115.54911 * 325.58261 * 5 3 2 7 7 N 1.46508 * 109.47376 * 34.41714 * 6 5 3 8 8 C 1.46493 * 120.00001 * 270.00008 * 7 6 5 9 9 C 1.36932 * 119.99728 * 89.99676 * 7 6 5 10 10 H 1.08001 * 120.00346 * 339.28362 * 9 7 6 11 11 C 1.38821 * 119.99784 * 159.01369 * 9 7 6 12 12 N 1.31619 * 119.99369 * 345.01398 * 11 9 7 13 13 Si 1.86795 * 120.00085 * 165.02004 * 11 9 7 14 14 H 1.48495 * 109.47414 * 59.99895 * 13 11 9 15 15 H 1.48506 * 109.47041 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47004 * 299.99350 * 13 11 9 17 17 C 1.53001 * 117.49752 * 111.25252 * 5 3 2 18 18 C 1.52992 * 117.49702 * 179.90894 * 5 3 2 19 19 H 1.08995 * 109.47055 * 300.00157 * 1 2 3 20 20 H 1.08994 * 109.46839 * 60.00221 * 1 2 3 21 21 H 1.09001 * 109.47108 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47437 * 274.41379 * 6 5 3 23 23 H 1.09003 * 109.46972 * 154.41525 * 6 5 3 24 24 H 1.09005 * 109.47211 * 264.92691 * 8 7 6 25 25 H 1.09005 * 109.47317 * 24.92515 * 8 7 6 26 26 H 1.08995 * 109.47534 * 144.92393 * 8 7 6 27 27 H 0.97003 * 119.99139 * 180.02562 * 12 11 9 28 28 H 1.08995 * 117.49760 * 215.00803 * 17 5 3 29 29 H 1.09006 * 117.49752 * 0.02562 * 17 5 3 30 30 H 1.08995 * 117.50315 * 359.97438 * 18 5 3 31 31 H 1.09003 * 117.49710 * 144.97514 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.2846 0.1725 0.7813 7 7 3.5317 -1.0789 0.6640 8 6 2.4912 -1.4022 1.6433 9 6 3.8006 -1.9462 -0.3609 10 1 4.3001 -1.5924 -1.2508 11 6 3.4363 -3.2814 -0.2539 12 7 3.1087 -3.7822 0.9184 13 14 3.4111 -4.3674 -1.7735 14 1 4.7694 -4.4131 -2.3719 15 1 2.9904 -5.7401 -1.3941 16 1 2.4527 -3.8123 -2.7628 17 6 4.2466 1.8029 -1.2641 18 6 4.2007 2.6671 -0.0016 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 4.3548 0.4573 1.8311 23 1 5.2864 0.0331 0.3749 24 1 2.9122 -2.0337 2.4257 25 1 2.1096 -0.4818 2.0853 26 1 1.6776 -1.9317 1.1476 27 1 2.8545 -4.7153 0.9932 28 1 5.2057 1.3648 -1.5400 29 1 3.6055 2.0936 -2.0964 30 1 3.5297 3.5260 -0.0039 31 1 5.1297 2.7978 0.5535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379372086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:49 Heat of formation + Delta-G solvation = -37.119195 kcal Electronic energy + Delta-G solvation = -15232.505796 eV Core-core repulsion = 12709.031504 eV Total energy + Delta-G solvation = -2523.474291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57569 -38.55717 -37.57740 -36.15157 -32.96251 -29.09395 -28.11591 -27.68922 -24.76710 -23.45602 -22.99069 -20.59576 -18.72970 -18.23029 -17.51567 -17.19376 -16.51843 -15.69189 -15.27338 -15.06487 -14.80691 -14.26377 -14.04954 -13.35133 -13.17817 -12.78486 -12.72502 -12.45295 -12.36970 -12.25093 -11.99285 -11.89390 -11.68508 -11.46674 -11.17776 -10.84618 -10.46754 -8.66557 -7.70168 -5.13770 1.21078 1.50801 1.53381 1.58870 2.00081 2.58592 2.90924 3.41522 3.62613 3.89345 3.99168 4.12120 4.22850 4.27955 4.32966 4.66438 4.73160 4.86019 4.89176 4.96988 4.98404 5.06799 5.25150 5.53012 5.56447 5.74582 5.86836 6.43901 6.94801 7.27570 7.99655 8.43913 9.33815 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.012045 C = 0.010868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.033509 B = 2323.993248 C = 2575.754927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.501 3.499 4 O -0.556 6.556 5 C -0.183 4.183 6 C 0.186 3.814 7 N -0.598 5.598 8 C 0.204 3.796 9 C -0.235 4.235 10 H 0.069 0.931 11 C -0.052 4.052 12 N -0.940 5.940 13 Si 0.957 3.043 14 H -0.276 1.276 15 H -0.300 1.300 16 H -0.285 1.285 17 C -0.135 4.135 18 C -0.125 4.125 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.104 0.896 22 H 0.055 0.945 23 H 0.071 0.929 24 H -0.008 1.008 25 H 0.005 0.995 26 H 0.025 0.975 27 H 0.244 0.756 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 9.509 -2.203 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.347 3.653 4 O -0.450 6.450 5 C -0.187 4.187 6 C 0.059 3.941 7 N -0.319 5.319 8 C 0.059 3.941 9 C -0.365 4.365 10 H 0.087 0.913 11 C -0.247 4.247 12 N -0.588 5.588 13 Si 0.787 3.213 14 H -0.202 1.202 15 H -0.226 1.226 16 H -0.212 1.212 17 C -0.172 4.172 18 C -0.162 4.162 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.122 0.878 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.010 0.990 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.037 9.573 -2.149 9.811 hybrid contribution -0.687 -0.901 -0.640 1.301 sum -0.724 8.672 -2.790 9.138 Atomic orbital electron populations 1.23341 0.77549 1.04034 1.01953 1.87168 1.22479 1.31403 1.82063 1.22915 0.91185 0.80895 0.70285 1.90534 1.67824 1.37437 1.49178 1.22371 0.87510 1.00913 1.07910 1.20442 0.93637 0.83262 0.96802 1.43912 1.38894 1.18561 1.30543 1.20310 0.90243 0.93068 0.90431 1.19324 1.33608 0.88795 0.94820 0.91317 1.25539 1.02964 0.97806 0.98351 1.70244 1.52797 1.12903 1.22880 0.85485 0.77993 0.77685 0.80123 1.20199 1.22624 1.21176 1.23146 1.02060 1.01447 0.90580 1.23170 1.02501 0.90615 0.99933 0.91991 0.92031 0.87760 0.92717 0.91062 0.99039 0.97684 0.95637 0.94695 0.85976 0.89140 0.88249 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.42 113.37 1.18 2.04 16 2 O -0.32 -13.42 5.13 -51.44 -0.26 -13.69 16 3 C 0.50 20.03 7.04 71.24 0.50 20.53 16 4 O -0.56 -22.95 16.01 21.97 0.35 -22.60 16 5 C -0.18 -6.34 2.52 -52.93 -0.13 -6.47 16 6 C 0.19 7.18 5.80 86.38 0.50 7.68 16 7 N -0.60 -29.10 1.81 -726.93 -1.32 -30.42 16 8 C 0.20 10.15 6.69 127.77 0.85 11.01 16 9 C -0.24 -12.47 9.53 84.04 0.80 -11.67 16 10 H 0.07 3.53 7.87 -2.91 -0.02 3.50 16 11 C -0.05 -2.89 5.06 84.86 0.43 -2.46 16 12 N -0.94 -55.21 10.70 21.65 0.23 -54.97 16 13 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 C -0.14 -3.79 9.88 30.62 0.30 -3.49 16 18 C -0.12 -3.22 9.77 30.61 0.30 -2.92 16 19 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 20 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 21 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 22 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 23 H 0.07 2.58 7.80 -2.39 -0.02 2.57 16 24 H -0.01 -0.47 7.39 -2.38 -0.02 -0.49 16 25 H 0.00 0.21 7.07 -2.38 -0.02 0.20 16 26 H 0.02 1.34 6.53 -2.39 -0.02 1.33 16 27 H 0.24 14.07 8.31 -92.71 -0.77 13.29 16 28 H 0.12 3.02 8.05 -2.39 -0.02 3.00 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.10 2.63 7.67 -2.39 -0.02 2.62 16 31 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.90 260.73 6.87 -58.02 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.10 Total: 2.54 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 4.74 Total: 14.24 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -1.08 Total: -85.39 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: 0.09 Total: -36.29 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.90 6.87 -58.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379372086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.902 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds