Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46497 * 109.47065 * 240.00447 * 2 1 3 5 5 C 1.37099 * 120.00063 * 59.14685 * 4 2 1 6 6 H 1.07999 * 120.00372 * 314.86992 * 5 4 2 7 7 C 1.38954 * 119.99926 * 134.87429 * 5 4 2 8 8 N 1.31410 * 119.99819 * 160.07347 * 7 5 4 9 9 Si 1.86802 * 119.99697 * 340.06783 * 7 5 4 10 10 H 1.48501 * 109.46783 * 95.29042 * 9 7 5 11 11 H 1.48502 * 109.46964 * 215.28443 * 9 7 5 12 12 H 1.48498 * 109.47352 * 335.28847 * 9 7 5 13 13 C 1.34777 * 119.99758 * 239.15180 * 4 2 1 14 14 O 1.21297 * 119.99707 * 180.02562 * 13 4 2 15 15 C 1.50697 * 120.00169 * 359.97438 * 13 4 2 16 16 H 1.09001 * 112.67694 * 63.99798 * 15 13 4 17 17 C 1.53366 * 113.39629 * 293.42536 * 15 13 4 18 18 C 1.53363 * 81.25891 * 218.61326 * 17 15 13 19 19 O 1.43343 * 113.39411 * 194.50568 * 15 13 4 20 20 H 1.09001 * 109.47319 * 54.52684 * 1 2 3 21 21 H 1.08998 * 109.47122 * 174.53184 * 1 2 3 22 22 H 1.09002 * 109.47007 * 294.52362 * 1 2 3 23 23 H 1.08999 * 109.47305 * 120.00022 * 2 1 3 24 24 H 1.09004 * 109.46858 * 65.28702 * 3 2 1 25 25 H 1.08998 * 109.46947 * 185.28494 * 3 2 1 26 26 H 1.08995 * 109.47227 * 305.28541 * 3 2 1 27 27 H 0.97000 * 119.99839 * 179.97438 * 8 7 5 28 28 H 1.08991 * 114.56401 * 331.70751 * 17 15 13 29 29 H 1.09000 * 114.56343 * 105.52085 * 17 15 13 30 30 H 1.08997 * 113.39401 * 271.58345 * 18 17 15 31 31 H 1.09004 * 113.39118 * 141.38453 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6728 -0.2323 -2.4413 6 1 0.6501 0.0454 -2.6499 7 6 2.6382 -0.1253 -3.4349 8 7 2.2784 -0.0727 -4.6977 9 14 4.4475 -0.0560 -2.9754 10 1 5.0315 -1.4190 -3.0572 11 1 5.1624 0.8458 -3.9140 12 1 4.5871 0.4600 -1.5900 13 6 2.8072 -1.7763 -1.0726 14 8 3.2119 -2.3477 -2.0631 15 6 3.1875 -2.2796 0.2959 16 1 2.3280 -2.6256 0.8702 17 6 4.0899 -1.3121 1.0716 18 6 4.7415 -2.6327 1.4999 19 8 4.2731 -3.2154 0.2768 20 1 -0.3634 0.5964 -0.8369 21 1 -0.3633 -1.0230 -0.0979 22 1 -0.3633 0.4266 0.9350 23 1 1.8934 -0.5138 0.8900 24 1 1.7560 1.9283 0.9336 25 1 3.1259 1.4440 -0.0947 26 1 1.6015 1.9830 -0.8388 27 1 2.9524 0.0024 -5.3912 28 1 4.7185 -0.6786 0.4460 29 1 3.5898 -0.7719 1.8755 30 1 4.2882 -3.0705 2.3893 31 1 5.8282 -2.5780 1.5650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379390252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -27.582306 kcal Electronic energy + Delta-G solvation = -15418.935759 eV Core-core repulsion = 12895.875019 eV Total energy + Delta-G solvation = -2523.060741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76982 -38.27776 -35.50863 -32.40755 -30.52650 -29.80674 -27.24295 -26.61196 -24.25602 -21.53672 -20.56916 -19.42453 -17.40783 -16.51892 -15.87214 -15.56308 -14.81341 -14.34681 -13.89726 -13.50826 -13.02762 -12.70527 -12.48757 -12.37095 -12.21218 -11.65686 -11.49576 -11.04784 -10.86955 -10.77528 -10.71389 -10.20771 -10.16758 -9.85563 -9.57154 -8.54644 -8.33116 -7.55329 -6.17584 -3.93675 3.29148 3.43094 3.67134 3.72334 3.96570 4.37581 4.56200 4.62842 5.04708 5.17018 5.32533 5.39572 5.42658 5.53824 5.73548 5.78616 5.84218 5.97934 6.08565 6.17172 6.28415 6.36028 6.41464 6.45858 6.81964 6.90225 7.88561 8.06047 8.80595 8.96690 9.46340 9.85613 10.88863 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.017346 C = 0.013068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.576647 B = 1613.778208 C = 2142.195755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.153 4.153 4 N -0.455 5.455 5 C -0.342 4.342 6 H 0.095 0.905 7 C 0.095 3.905 8 N -0.865 5.865 9 Si 0.896 3.104 10 H -0.257 1.257 11 H -0.304 1.304 12 H -0.276 1.276 13 C 0.450 3.550 14 O -0.529 6.529 15 C 0.044 3.956 16 H 0.105 0.895 17 C -0.179 4.179 18 C 0.023 3.977 19 O -0.342 6.342 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.271 0.729 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 1.417 14.360 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.016 3.984 3 C -0.211 4.211 4 N -0.180 5.180 5 C -0.468 4.468 6 H 0.113 0.887 7 C -0.114 4.114 8 N -0.500 5.500 9 Si 0.725 3.275 10 H -0.183 1.183 11 H -0.233 1.233 12 H -0.201 1.201 13 C 0.238 3.762 14 O -0.409 6.409 15 C -0.017 4.017 16 H 0.122 0.878 17 C -0.217 4.217 18 C -0.054 4.054 19 O -0.259 6.259 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.323 0.908 13.463 13.558 hybrid contribution 0.832 0.213 0.270 0.901 sum 2.155 1.121 13.734 13.947 Atomic orbital electron populations 1.22040 0.95660 1.02049 1.01297 1.21207 0.94619 0.93672 0.88878 1.22057 1.01348 0.96432 1.01259 1.43677 1.45537 1.22876 1.05884 1.18664 0.96098 1.47122 0.84931 0.88724 1.25275 0.99488 0.92231 0.94404 1.69758 1.35267 1.45378 0.99597 0.86626 0.85167 0.78148 0.77535 1.18262 1.23263 1.20115 1.20168 0.84579 0.82018 0.89444 1.90588 1.54351 1.57495 1.38461 1.23203 0.92390 0.89262 0.96884 0.87803 1.24434 0.99002 0.97877 1.00389 1.23572 1.00795 0.91739 0.89307 1.90032 1.40826 1.56373 1.38715 0.91517 0.92883 0.93083 0.91360 0.93223 0.92990 0.91146 0.91895 0.88120 0.89563 0.90291 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.02 37.16 0.34 -2.11 16 2 C 0.12 2.16 2.80 -67.93 -0.19 1.97 16 3 C -0.15 -2.57 9.09 37.16 0.34 -2.23 16 4 N -0.46 -10.81 2.04 -107.73 -0.22 -11.03 16 5 C -0.34 -9.56 8.45 -14.93 -0.13 -9.68 16 6 H 0.10 2.74 7.25 -52.49 -0.38 2.36 16 7 C 0.09 2.83 4.82 -17.47 -0.08 2.75 16 8 N -0.87 -26.82 13.96 55.50 0.77 -26.04 16 9 Si 0.90 24.39 25.04 -169.99 -4.26 20.14 16 10 H -0.26 -7.60 6.49 56.52 0.37 -7.24 16 11 H -0.30 -8.08 7.11 56.52 0.40 -7.67 16 12 H -0.28 -6.93 6.53 56.52 0.37 -6.56 16 13 C 0.45 11.18 5.50 -10.99 -0.06 11.12 16 14 O -0.53 -15.88 12.79 -11.02 -0.14 -16.02 16 15 C 0.04 0.84 3.24 -40.46 -0.13 0.71 16 16 H 0.10 1.64 7.98 -51.93 -0.41 1.23 16 17 C -0.18 -2.72 6.93 -26.35 -0.18 -2.91 16 18 C 0.02 0.32 8.73 24.58 0.21 0.54 16 19 O -0.34 -6.94 12.27 -51.79 -0.64 -7.58 16 20 H 0.07 1.17 7.31 -51.93 -0.38 0.79 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.03 4.65 -51.93 -0.24 0.79 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.93 7.81 -51.93 -0.41 0.52 16 26 H 0.07 1.29 7.85 -51.93 -0.41 0.89 16 27 H 0.27 7.95 8.31 -40.82 -0.34 7.62 16 28 H 0.10 1.75 7.88 -51.93 -0.41 1.34 16 29 H 0.09 1.00 7.37 -51.93 -0.38 0.61 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 251.92 15.07 3.80 3.80 Total: -1.00 -35.07 251.92 -4.90 -39.98 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.34 Total: -3.38 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 0.11 Total: 0.15 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.55 Total: -37.07 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.78 Total: -23.60 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.26 Total: 20.14 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.07 -4.90 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379390252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.393 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds