Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46497 * 109.47065 * 240.00447 * 2 1 3 5 5 C 1.37099 * 120.00063 * 59.14685 * 4 2 1 6 6 H 1.07999 * 120.00372 * 314.86992 * 5 4 2 7 7 C 1.38954 * 119.99926 * 134.87429 * 5 4 2 8 8 N 1.31410 * 119.99819 * 160.07347 * 7 5 4 9 9 Si 1.86802 * 119.99697 * 340.06783 * 7 5 4 10 10 H 1.48501 * 109.46783 * 95.29042 * 9 7 5 11 11 H 1.48502 * 109.46964 * 215.28443 * 9 7 5 12 12 H 1.48498 * 109.47352 * 335.28847 * 9 7 5 13 13 C 1.34777 * 119.99758 * 239.15180 * 4 2 1 14 14 O 1.21297 * 119.99707 * 180.02562 * 13 4 2 15 15 C 1.50697 * 120.00169 * 359.97438 * 13 4 2 16 16 H 1.09001 * 112.67694 * 63.99798 * 15 13 4 17 17 C 1.53366 * 113.39629 * 293.42536 * 15 13 4 18 18 C 1.53363 * 81.25891 * 218.61326 * 17 15 13 19 19 O 1.43343 * 113.39411 * 194.50568 * 15 13 4 20 20 H 1.09001 * 109.47319 * 54.52684 * 1 2 3 21 21 H 1.08998 * 109.47122 * 174.53184 * 1 2 3 22 22 H 1.09002 * 109.47007 * 294.52362 * 1 2 3 23 23 H 1.08999 * 109.47305 * 120.00022 * 2 1 3 24 24 H 1.09004 * 109.46858 * 65.28702 * 3 2 1 25 25 H 1.08998 * 109.46947 * 185.28494 * 3 2 1 26 26 H 1.08995 * 109.47227 * 305.28541 * 3 2 1 27 27 H 0.97000 * 119.99839 * 179.97438 * 8 7 5 28 28 H 1.08991 * 114.56401 * 331.70751 * 17 15 13 29 29 H 1.09000 * 114.56343 * 105.52085 * 17 15 13 30 30 H 1.08997 * 113.39401 * 271.58345 * 18 17 15 31 31 H 1.09004 * 113.39118 * 141.38453 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6728 -0.2323 -2.4413 6 1 0.6501 0.0454 -2.6499 7 6 2.6382 -0.1253 -3.4349 8 7 2.2784 -0.0727 -4.6977 9 14 4.4475 -0.0560 -2.9754 10 1 5.0315 -1.4190 -3.0572 11 1 5.1624 0.8458 -3.9140 12 1 4.5871 0.4600 -1.5900 13 6 2.8072 -1.7763 -1.0726 14 8 3.2119 -2.3477 -2.0631 15 6 3.1875 -2.2796 0.2959 16 1 2.3280 -2.6256 0.8702 17 6 4.0899 -1.3121 1.0716 18 6 4.7415 -2.6327 1.4999 19 8 4.2731 -3.2154 0.2768 20 1 -0.3634 0.5964 -0.8369 21 1 -0.3633 -1.0230 -0.0979 22 1 -0.3633 0.4266 0.9350 23 1 1.8934 -0.5138 0.8900 24 1 1.7560 1.9283 0.9336 25 1 3.1259 1.4440 -0.0947 26 1 1.6015 1.9830 -0.8388 27 1 2.9524 0.0024 -5.3912 28 1 4.7185 -0.6786 0.4460 29 1 3.5898 -0.7719 1.8755 30 1 4.2882 -3.0705 2.3893 31 1 5.8282 -2.5780 1.5650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379390252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -54.060594 kcal Electronic energy + Delta-G solvation = -15420.083944 eV Core-core repulsion = 12895.875019 eV Total energy + Delta-G solvation = -2524.208925 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.20114 -40.01911 -37.31903 -34.54378 -32.22801 -31.22579 -28.78114 -27.90473 -26.11703 -23.00811 -21.93110 -21.25799 -19.12149 -18.10471 -17.46856 -17.09491 -16.72679 -15.94445 -15.63347 -15.14923 -14.84055 -14.35483 -14.11039 -13.95428 -13.74878 -13.14573 -12.88159 -12.73400 -12.61759 -12.28025 -12.16998 -11.97571 -11.77219 -11.53959 -10.93395 -10.80686 -10.22126 -9.55713 -8.44704 -6.17697 1.13070 1.25965 1.43615 1.85973 2.37328 2.41339 3.02906 3.14504 3.17176 3.75169 3.95040 4.09716 4.28757 4.37610 4.44790 4.49339 4.72665 4.80638 4.92024 4.93608 5.00685 5.11001 5.15335 5.18073 5.50078 5.54705 5.72914 5.94166 6.77731 6.92654 7.33972 7.88150 8.65237 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.017346 C = 0.013068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.576647 B = 1613.778208 C = 2142.195755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.111 3.889 3 C -0.150 4.150 4 N -0.463 5.463 5 C -0.327 4.327 6 H 0.073 0.927 7 C 0.045 3.955 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.298 1.298 11 H -0.299 1.299 12 H -0.243 1.243 13 C 0.436 3.564 14 O -0.596 6.596 15 C 0.042 3.958 16 H 0.146 0.854 17 C -0.168 4.168 18 C 0.027 3.973 19 O -0.392 6.392 20 H 0.039 0.961 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.270 0.730 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 2.058 18.780 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 C -0.208 4.208 4 N -0.187 5.187 5 C -0.455 4.455 6 H 0.091 0.909 7 C -0.159 4.159 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.226 1.226 11 H -0.227 1.227 12 H -0.166 1.166 13 C 0.226 3.774 14 O -0.480 6.480 15 C -0.019 4.019 16 H 0.163 0.837 17 C -0.206 4.206 18 C -0.048 4.048 19 O -0.311 6.311 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.117 0.883 23 H 0.128 0.872 24 H 0.118 0.882 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.358 1.603 17.952 18.074 hybrid contribution 0.724 -0.057 -1.015 1.248 sum 2.082 1.546 16.937 17.134 Atomic orbital electron populations 1.22018 0.94303 1.01521 1.02763 1.21661 0.95717 0.94286 0.87440 1.22052 1.00312 0.95574 1.02853 1.43959 1.45146 1.23258 1.06332 1.18593 0.94923 1.44944 0.87015 0.90923 1.25891 1.02398 0.93006 0.94567 1.69845 1.35972 1.48685 1.00463 0.85882 0.81977 0.75889 0.79209 1.22574 1.22722 1.16647 1.21420 0.83095 0.81369 0.91544 1.90550 1.56698 1.59369 1.41397 1.23428 0.94185 0.90964 0.93313 0.83736 1.24407 0.97712 0.98081 1.00374 1.23930 1.02100 0.90328 0.88489 1.90021 1.41703 1.57266 1.42096 0.94133 0.93665 0.88314 0.87209 0.88219 0.94130 0.93790 0.92078 0.90727 0.84553 0.85890 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.02 71.98 0.65 -3.62 16 2 C 0.11 3.56 2.80 44.99 0.13 3.68 16 3 C -0.15 -4.46 9.09 71.98 0.65 -3.80 16 4 N -0.46 -21.53 2.04 -613.12 -1.25 -22.78 16 5 C -0.33 -18.67 8.45 84.04 0.71 -17.96 16 6 H 0.07 4.38 7.25 -2.91 -0.02 4.36 16 7 C 0.05 2.78 4.82 84.93 0.41 3.19 16 8 N -0.91 -59.12 13.96 21.66 0.30 -58.82 16 9 Si 0.94 51.82 25.04 68.60 1.72 53.54 16 10 H -0.30 -18.35 6.49 99.48 0.65 -17.71 16 11 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 12 H -0.24 -11.79 6.53 99.48 0.65 -11.14 16 13 C 0.44 21.32 5.50 87.66 0.48 21.80 16 14 O -0.60 -36.78 12.79 12.75 0.16 -36.61 16 15 C 0.04 1.46 3.24 21.70 0.07 1.53 16 16 H 0.15 3.79 7.98 -2.39 -0.02 3.77 16 17 C -0.17 -4.25 6.93 30.84 0.21 -4.04 16 18 C 0.03 0.63 8.73 63.84 0.56 1.19 16 19 O -0.39 -15.04 12.27 -133.15 -1.63 -16.67 16 20 H 0.04 1.37 7.31 -2.39 -0.02 1.35 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.11 2.62 4.65 -2.39 -0.01 2.61 16 24 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.04 1.29 7.81 -2.39 -0.02 1.27 16 26 H 0.04 1.53 7.85 -2.39 -0.02 1.51 16 27 H 0.27 16.66 8.31 -92.71 -0.77 15.89 16 28 H 0.07 2.32 7.88 -2.39 -0.02 2.30 16 29 H 0.14 2.07 7.37 -2.39 -0.02 2.05 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -83.48 251.92 4.16 -79.32 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: 0.99 Total: 0.06 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 3.87 Total: 1.96 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.95 Total: -81.59 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -1.47 Total: -53.28 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.72 Total: 53.54 kcal Total: -83.48 4.16 -79.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379390252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.260 kcal (2) G-P(sol) polarization free energy of solvation -83.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds