Wall clock time and date at job start Mon Mar 30 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.39080 * 2 1 4 4 C 1.54780 * 110.35764 * 237.45792 * 2 1 3 5 5 C 1.54488 * 102.05166 * 268.00361 * 4 2 1 6 6 H 1.09002 * 110.36459 * 103.65872 * 5 4 2 7 7 N 1.46898 * 110.37209 * 225.87512 * 5 4 2 8 8 C 1.46904 * 111.00074 * 203.46316 * 7 5 4 9 9 C 1.52998 * 109.46861 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46700 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.51329 * 104.92340 * 344.77239 * 5 4 2 19 19 O 1.20822 * 125.09898 * 177.66133 * 18 5 4 20 20 O 1.34064 * 109.81169 * 357.62387 * 18 5 4 21 21 H 1.09002 * 109.46907 * 299.03210 * 1 2 3 22 22 H 1.09001 * 109.47702 * 59.03099 * 1 2 3 23 23 H 1.09005 * 109.47305 * 179.03179 * 1 2 3 24 24 H 1.09003 * 110.86097 * 149.89986 * 4 2 1 25 25 H 1.08996 * 110.96054 * 26.16281 * 4 2 1 26 26 H 1.00901 * 110.99793 * 327.41876 * 7 5 4 27 27 H 1.09004 * 109.47048 * 60.00131 * 8 7 5 28 28 H 1.08997 * 109.46845 * 300.00295 * 8 7 5 29 29 H 1.09004 * 109.47139 * 60.00240 * 9 8 7 30 30 H 1.08997 * 109.47675 * 299.99840 * 9 8 7 31 31 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0685 -0.7806 -1.2233 5 6 2.2300 -2.2063 -0.6506 6 1 1.4197 -2.8481 -0.9965 7 7 3.5294 -2.7698 -1.0405 8 6 3.4966 -4.2382 -1.0109 9 6 4.8641 -4.7871 -1.4225 10 6 4.8307 -6.2934 -1.3915 11 1 3.9246 -6.8078 -1.1071 12 6 5.9569 -7.0150 -1.7263 13 7 5.9276 -8.3296 -1.6997 14 14 7.5243 -6.1255 -2.2176 15 1 8.3491 -5.8718 -1.0090 16 1 7.1787 -4.8327 -2.8613 17 1 8.2911 -6.9648 -3.1729 18 6 2.1602 -2.0332 0.8512 19 8 2.2072 -2.9322 1.6570 20 8 2.0393 -0.7327 1.1535 21 1 -0.3633 0.4987 0.8986 22 1 -0.3634 0.5288 -0.8811 23 1 -0.3634 -1.0276 -0.0174 24 1 3.0297 -0.3808 -1.5464 25 1 1.3476 -0.7699 -2.0408 26 1 3.8118 -2.4327 -1.9486 27 1 2.7370 -4.5987 -1.7045 28 1 3.2576 -4.5759 -0.0025 29 1 5.6241 -4.4266 -0.7293 30 1 5.1027 -4.4494 -2.4310 31 1 6.7200 -8.8373 -1.9348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379393811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:54 Heat of formation + Delta-G solvation = -88.823125 kcal Electronic energy + Delta-G solvation = -14170.170106 eV Core-core repulsion = 11644.453764 eV Total energy + Delta-G solvation = -2525.716342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06899 -37.44742 -36.16608 -33.35404 -32.41535 -30.63285 -28.12535 -25.33827 -23.81030 -22.13358 -20.42602 -20.32145 -17.20040 -16.80618 -16.64136 -16.20294 -14.99650 -14.70270 -14.21422 -14.01539 -13.62403 -13.30238 -13.16506 -12.55811 -12.48709 -12.28407 -11.74442 -11.50850 -11.32536 -11.01020 -10.70710 -10.31418 -10.04774 -9.80370 -9.77235 -9.22248 -8.52620 -8.19022 -6.02829 -4.01446 2.21294 3.16047 3.34014 3.40486 3.43929 4.01757 4.03474 4.27032 4.47112 4.47798 4.80732 4.85666 5.07619 5.20658 5.31338 5.41088 5.48080 5.53889 5.76310 6.12801 6.18522 6.74143 6.78624 6.96391 7.31947 7.44127 7.61539 7.66926 7.82931 8.54210 9.01350 9.58892 11.10542 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058325 B = 0.006217 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.951415 B = 4502.401479 C = 4658.944595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.120 0.880 4 C -0.155 4.155 5 C 0.025 3.975 6 H 0.085 0.915 7 N -0.673 5.673 8 C 0.067 3.933 9 C -0.008 4.008 10 C -0.521 4.521 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.266 1.266 17 H -0.289 1.289 18 C 0.494 3.506 19 O -0.444 6.444 20 O -0.345 6.345 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.347 0.653 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.022 0.978 30 H 0.014 0.986 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 18.951 -1.398 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.027 3.973 3 H 0.137 0.863 4 C -0.193 4.193 5 C -0.087 4.087 6 H 0.103 0.897 7 N -0.308 5.308 8 C -0.060 4.060 9 C -0.046 4.046 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.711 3.289 15 H -0.202 1.202 16 H -0.191 1.191 17 H -0.215 1.215 18 C 0.331 3.669 19 O -0.324 6.324 20 O -0.262 6.262 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.167 0.833 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.316 18.498 -0.202 20.713 hybrid contribution 0.346 0.062 -1.184 1.235 sum -8.970 18.560 -1.386 20.660 Atomic orbital electron populations 1.22310 0.93787 1.03446 1.03624 1.23644 0.94583 0.96617 0.82505 0.86263 1.23299 1.03978 0.93961 0.98072 1.22766 0.95399 0.96786 0.93748 0.89695 1.60491 1.24071 1.11105 1.35083 1.22188 0.99784 0.82613 1.01454 1.19537 0.92349 0.96748 0.95986 1.21043 0.99613 0.89113 1.46203 0.91013 1.25004 0.98775 0.94716 0.94892 1.69917 1.29648 1.05456 1.49180 0.86728 0.83493 0.79939 0.78781 1.20192 1.19060 1.21474 1.23049 0.71609 0.81286 0.90927 1.90714 1.43580 1.40949 1.57159 1.87078 1.77323 1.21332 1.40429 0.90976 0.90090 0.91859 0.88228 0.88458 0.83338 0.95424 0.90573 0.96000 0.96782 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.43 37.16 0.35 -0.82 16 2 C 0.08 0.70 4.27 -25.79 -0.11 0.59 16 3 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.16 -1.33 6.26 -25.01 -0.16 -1.48 16 5 C 0.03 0.34 3.29 -67.78 -0.22 0.12 16 6 H 0.09 1.10 7.84 -51.93 -0.41 0.70 16 7 N -0.67 -11.17 6.29 -106.79 -0.67 -11.84 16 8 C 0.07 1.40 5.46 -3.82 -0.02 1.38 16 9 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 10 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 11 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 14 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 C 0.49 8.17 7.99 36.31 0.29 8.46 16 19 O -0.44 -9.26 17.33 -18.41 -0.32 -9.58 16 20 O -0.34 -4.81 10.78 -38.48 -0.41 -5.23 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 24 H 0.10 0.80 7.85 -51.93 -0.41 0.39 16 25 H 0.10 0.59 7.92 -51.93 -0.41 0.17 16 26 H 0.35 4.93 8.29 -39.29 -0.33 4.60 16 27 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 28 H 0.08 1.76 7.47 -51.93 -0.39 1.37 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 263.73 15.07 3.97 3.97 Total: -1.00 -34.54 263.73 -6.15 -40.68 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.40 Total: -2.12 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.42 Total: -5.77 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.10 Total: -39.43 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.73 Total: -14.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.54 -6.15 -40.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379393811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.141 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds