Wall clock time and date at job start Mon Mar 30 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.39080 * 2 1 4 4 C 1.54780 * 110.35764 * 237.45792 * 2 1 3 5 5 C 1.54488 * 102.05166 * 268.00361 * 4 2 1 6 6 H 1.09002 * 110.36459 * 103.65872 * 5 4 2 7 7 N 1.46898 * 110.37209 * 225.87512 * 5 4 2 8 8 C 1.46904 * 111.00074 * 203.46316 * 7 5 4 9 9 C 1.52998 * 109.46861 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46700 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.51329 * 104.92340 * 344.77239 * 5 4 2 19 19 O 1.20822 * 125.09898 * 177.66133 * 18 5 4 20 20 O 1.34064 * 109.81169 * 357.62387 * 18 5 4 21 21 H 1.09002 * 109.46907 * 299.03210 * 1 2 3 22 22 H 1.09001 * 109.47702 * 59.03099 * 1 2 3 23 23 H 1.09005 * 109.47305 * 179.03179 * 1 2 3 24 24 H 1.09003 * 110.86097 * 149.89986 * 4 2 1 25 25 H 1.08996 * 110.96054 * 26.16281 * 4 2 1 26 26 H 1.00901 * 110.99793 * 327.41876 * 7 5 4 27 27 H 1.09004 * 109.47048 * 60.00131 * 8 7 5 28 28 H 1.08997 * 109.46845 * 300.00295 * 8 7 5 29 29 H 1.09004 * 109.47139 * 60.00240 * 9 8 7 30 30 H 1.08997 * 109.47675 * 299.99840 * 9 8 7 31 31 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0685 -0.7806 -1.2233 5 6 2.2300 -2.2063 -0.6506 6 1 1.4197 -2.8481 -0.9965 7 7 3.5294 -2.7698 -1.0405 8 6 3.4966 -4.2382 -1.0109 9 6 4.8641 -4.7871 -1.4225 10 6 4.8307 -6.2934 -1.3915 11 1 3.9246 -6.8078 -1.1071 12 6 5.9569 -7.0150 -1.7263 13 7 5.9276 -8.3296 -1.6997 14 14 7.5243 -6.1255 -2.2176 15 1 8.3491 -5.8718 -1.0090 16 1 7.1787 -4.8327 -2.8613 17 1 8.2911 -6.9648 -3.1729 18 6 2.1602 -2.0332 0.8512 19 8 2.2072 -2.9322 1.6570 20 8 2.0393 -0.7327 1.1535 21 1 -0.3633 0.4987 0.8986 22 1 -0.3634 0.5288 -0.8811 23 1 -0.3634 -1.0276 -0.0174 24 1 3.0297 -0.3808 -1.5464 25 1 1.3476 -0.7699 -2.0408 26 1 3.8118 -2.4327 -1.9486 27 1 2.7370 -4.5987 -1.7045 28 1 3.2576 -4.5759 -0.0025 29 1 5.6241 -4.4266 -0.7293 30 1 5.1027 -4.4494 -2.4310 31 1 6.7200 -8.8373 -1.9348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379393811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:54 Heat of formation + Delta-G solvation = -114.835548 kcal Electronic energy + Delta-G solvation = -14171.298089 eV Core-core repulsion = 11644.453764 eV Total energy + Delta-G solvation = -2526.844325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13561 -38.71666 -37.60311 -35.17270 -33.70735 -32.13409 -29.46472 -26.34749 -25.61645 -23.07027 -22.22401 -21.43481 -19.01851 -18.19729 -17.87461 -17.27150 -16.37784 -16.30749 -15.76318 -15.08822 -15.03093 -14.61843 -14.55603 -14.10748 -13.44274 -13.35288 -13.10974 -12.92905 -12.56411 -12.31110 -12.04224 -11.73893 -11.63358 -11.53886 -11.46639 -11.30513 -10.78920 -9.55296 -8.31260 -6.36990 0.97715 1.36965 1.39304 1.51204 2.18331 2.36110 2.97890 3.04139 3.16466 3.27636 3.79943 3.96546 4.13619 4.27989 4.38646 4.44594 4.68141 4.79357 4.89260 4.91309 4.96978 5.20380 5.25799 5.43346 5.59802 5.77437 5.85689 6.21955 6.41242 6.43059 6.70998 7.27729 8.85785 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058325 B = 0.006217 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.951415 B = 4502.401479 C = 4658.944595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H 0.153 0.847 4 C -0.138 4.138 5 C 0.023 3.977 6 H 0.092 0.908 7 N -0.675 5.675 8 C 0.083 3.917 9 C -0.002 4.002 10 C -0.539 4.539 11 H 0.027 0.973 12 C 0.004 3.996 13 N -0.952 5.952 14 Si 0.959 3.041 15 H -0.272 1.272 16 H -0.239 1.239 17 H -0.281 1.281 18 C 0.488 3.512 19 O -0.505 6.505 20 O -0.361 6.361 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.047 0.953 24 H 0.113 0.887 25 H 0.134 0.866 26 H 0.365 0.635 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.033 0.967 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 22.328 -3.333 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 H 0.170 0.830 4 C -0.176 4.176 5 C -0.088 4.088 6 H 0.109 0.891 7 N -0.312 5.312 8 C -0.046 4.046 9 C -0.040 4.040 10 C -0.577 4.577 11 H 0.045 0.955 12 C -0.193 4.193 13 N -0.592 5.592 14 Si 0.781 3.219 15 H -0.198 1.198 16 H -0.162 1.162 17 H -0.207 1.207 18 C 0.329 3.671 19 O -0.391 6.391 20 O -0.277 6.277 21 H 0.089 0.911 22 H 0.133 0.867 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.152 0.848 26 H 0.188 0.812 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.977 21.937 -2.166 23.801 hybrid contribution 0.119 -0.957 -0.542 1.106 sum -8.858 20.980 -2.708 22.934 Atomic orbital electron populations 1.22361 0.92401 1.03037 1.05242 1.24192 0.95780 0.97356 0.80617 0.82975 1.23382 1.05859 0.89658 0.98675 1.22873 0.93917 1.00105 0.91944 0.89083 1.60211 1.26420 1.08136 1.36408 1.21753 0.97803 0.85613 0.99429 1.19416 0.94280 0.93467 0.96835 1.21395 0.98291 0.91970 1.46044 0.95452 1.26063 1.03010 0.95498 0.94710 1.70077 1.31108 1.07531 1.50510 0.85542 0.78026 0.79600 0.78713 1.19782 1.16180 1.20661 1.23645 0.70005 0.81582 0.91886 1.90671 1.46399 1.43065 1.58934 1.87050 1.76937 1.20299 1.43454 0.91109 0.86694 0.93343 0.86863 0.84825 0.81240 0.95026 0.93894 0.96492 0.94834 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.43 71.98 0.68 -1.07 16 2 C 0.07 1.00 4.27 31.20 0.13 1.13 16 3 H 0.15 1.09 8.14 -2.39 -0.02 1.08 16 4 C -0.14 -1.75 6.26 31.71 0.20 -1.55 16 5 C 0.02 0.59 3.29 44.88 0.15 0.74 16 6 H 0.09 2.22 7.84 -2.39 -0.02 2.20 16 7 N -0.68 -21.17 6.29 -491.77 -3.10 -24.26 16 8 C 0.08 3.46 5.46 86.30 0.47 3.93 16 9 C 0.00 -0.11 4.30 29.85 0.13 0.02 16 10 C -0.54 -32.39 9.66 25.60 0.25 -32.14 16 11 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 12 C 0.00 0.24 5.47 84.65 0.46 0.70 16 13 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 14 Si 0.96 45.09 27.47 68.60 1.88 46.98 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 C 0.49 16.18 7.99 71.44 0.57 16.75 16 19 O -0.51 -22.17 17.33 21.65 0.38 -21.79 16 20 O -0.36 -9.62 10.78 -50.16 -0.54 -10.16 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.05 0.65 8.08 -2.38 -0.02 0.63 16 24 H 0.11 1.21 7.85 -2.39 -0.02 1.19 16 25 H 0.13 0.81 7.92 -2.39 -0.02 0.79 16 26 H 0.37 9.09 8.29 -89.69 -0.74 8.35 16 27 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.04 2.07 7.47 -2.39 -0.02 2.05 16 29 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 30 H 0.03 1.49 7.20 -2.39 -0.02 1.48 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -79.51 263.73 2.28 -77.23 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.32 Total: 4.51 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 3.04 Total: -11.49 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.80 Total: -85.28 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.17 Total: -31.95 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -79.51 2.28 -77.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379393811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.604 kcal (2) G-P(sol) polarization free energy of solvation -79.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds