Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.39663 * 2 1 4 4 C 1.54569 * 110.43977 * 122.55922 * 2 1 3 5 5 C 1.54520 * 102.21453 * 145.35049 * 4 2 1 6 6 H 1.09002 * 110.25474 * 103.79354 * 5 4 2 7 7 N 1.46898 * 110.49873 * 226.13340 * 5 4 2 8 8 C 1.46901 * 111.00247 * 201.91195 * 7 5 4 9 9 C 1.53001 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.46624 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00266 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99891 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00353 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47483 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47190 * 210.00185 * 14 12 10 17 17 H 1.48507 * 109.46876 * 330.00003 * 14 12 10 18 18 C 1.51332 * 104.80761 * 345.02818 * 5 4 2 19 19 O 1.20833 * 125.09363 * 177.54599 * 18 5 4 20 20 O 1.34062 * 109.81226 * 357.27446 * 18 5 4 21 21 H 1.09006 * 109.47565 * 180.96586 * 1 2 3 22 22 H 1.09002 * 109.47442 * 300.97000 * 1 2 3 23 23 H 1.09004 * 109.47291 * 60.96963 * 1 2 3 24 24 H 1.09002 * 110.86597 * 263.75379 * 4 2 1 25 25 H 1.08995 * 110.87073 * 27.21660 * 4 2 1 26 26 H 1.00901 * 110.99536 * 325.86868 * 7 5 4 27 27 H 1.09005 * 109.46800 * 299.99600 * 8 7 5 28 28 H 1.08996 * 109.47021 * 59.99662 * 8 7 5 29 29 H 1.08991 * 109.47179 * 299.99722 * 9 8 7 30 30 H 1.09004 * 109.47083 * 60.00558 * 9 8 7 31 31 H 0.96992 * 120.00445 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0697 -0.7795 1.2207 5 6 3.3480 -1.4345 0.6512 6 1 4.2328 -0.9032 1.0020 7 7 3.4150 -2.8509 1.0349 8 6 4.7958 -3.3485 0.9728 9 6 4.8252 -4.8233 1.3790 10 6 6.2416 -5.3338 1.3146 11 1 7.0409 -4.6725 1.0144 12 6 6.5172 -6.6451 1.6399 13 7 5.5440 -7.4504 2.0059 14 14 8.2730 -7.2779 1.5608 15 1 8.9326 -7.0734 2.8754 16 1 8.2629 -8.7259 1.2319 17 1 9.0192 -6.5372 0.5120 18 6 3.2147 -1.3014 -0.8504 19 8 4.0416 -1.6590 -1.6556 20 8 2.0392 -0.7326 -1.1535 21 1 -0.3634 -1.0275 0.0173 22 1 -0.3634 0.5288 0.8812 23 1 -0.3634 0.4987 -0.8986 24 1 2.3091 -0.1011 2.0396 25 1 1.3567 -1.5381 1.5433 26 1 3.0192 -2.9962 1.9516 27 1 5.1743 -3.2437 -0.0441 28 1 5.4209 -2.7717 1.6544 29 1 4.4468 -4.9277 2.3957 30 1 4.2001 -5.4004 0.6975 31 1 5.7377 -8.3729 2.2343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379393812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -117.217258 kcal Electronic energy + Delta-G solvation = -14077.314513 eV Core-core repulsion = 11550.366909 eV Total energy + Delta-G solvation = -2526.947604 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06299 -38.70719 -37.54318 -35.21410 -33.63383 -31.98826 -29.41576 -26.15952 -25.35440 -23.17657 -22.40765 -21.50247 -18.56423 -18.49912 -17.90144 -17.23644 -16.50194 -16.17495 -15.70912 -15.23748 -14.84280 -14.52003 -14.31212 -13.68135 -13.32663 -13.30626 -12.94961 -12.90423 -12.83622 -12.45467 -12.18333 -11.92547 -11.51892 -11.48351 -11.31140 -11.25478 -10.58239 -9.50849 -8.22611 -6.33993 0.98003 1.38932 1.41258 1.52533 2.14304 2.39611 2.98382 3.10896 3.18874 3.30953 3.84395 3.95949 4.18466 4.25866 4.45776 4.51302 4.76035 4.81682 4.91554 5.00244 5.04556 5.30467 5.38884 5.59514 5.72004 5.80173 5.96051 6.18300 6.41433 6.42707 6.81785 7.35132 8.89621 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063417 B = 0.005744 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.415997 B = 4873.145031 C = 5087.983013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.123 0.877 4 C -0.140 4.140 5 C 0.024 3.976 6 H 0.097 0.903 7 N -0.679 5.679 8 C 0.080 3.920 9 C 0.034 3.966 10 C -0.548 4.548 11 H 0.057 0.943 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.489 3.511 19 O -0.503 6.503 20 O -0.363 6.363 21 H 0.058 0.942 22 H 0.113 0.887 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.104 0.896 26 H 0.361 0.639 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.004 0.996 30 H -0.011 1.011 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 17.481 1.965 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.140 0.860 4 C -0.177 4.177 5 C -0.088 4.088 6 H 0.114 0.886 7 N -0.315 5.315 8 C -0.048 4.048 9 C -0.004 4.004 10 C -0.586 4.586 11 H 0.075 0.925 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.192 1.192 18 C 0.329 3.671 19 O -0.389 6.389 20 O -0.280 6.280 21 H 0.078 0.922 22 H 0.132 0.868 23 H 0.088 0.912 24 H 0.155 0.845 25 H 0.123 0.877 26 H 0.183 0.817 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.008 0.992 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.713 16.926 0.821 19.532 hybrid contribution 1.305 -0.481 0.520 1.485 sum -8.408 16.445 1.341 18.518 Atomic orbital electron populations 1.21959 0.90065 1.03699 1.04774 1.24151 0.97695 0.95668 0.80577 0.85953 1.23361 0.94352 1.01148 0.98874 1.22896 1.02374 0.91606 0.91902 0.88586 1.60217 1.21369 1.14426 1.35511 1.21905 0.87097 0.96409 0.99425 1.18898 0.95561 0.90957 0.94982 1.21584 0.94468 0.96647 1.45937 0.92493 1.25953 1.01995 0.97057 0.94514 1.70092 1.33931 1.06401 1.46559 0.85416 0.79105 0.77399 0.78938 1.19179 1.20580 1.19231 1.23608 0.78989 0.72557 0.91903 1.90662 1.41801 1.47482 1.58932 1.87015 1.34340 1.63354 1.43330 0.92242 0.86846 0.91168 0.84501 0.87714 0.81668 0.93568 0.94787 0.97809 0.99227 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.57 71.98 0.69 -0.92 16 2 C 0.07 1.12 4.18 31.13 0.13 1.25 16 3 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.14 -2.10 6.25 31.64 0.20 -1.90 16 5 C 0.02 0.64 3.30 44.89 0.15 0.79 16 6 H 0.10 2.37 7.87 -2.39 -0.02 2.36 16 7 N -0.68 -23.75 6.29 -491.71 -3.09 -26.84 16 8 C 0.08 3.55 5.46 86.30 0.47 4.02 16 9 C 0.03 1.84 5.23 29.85 0.16 1.99 16 10 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 0.18 5.46 84.66 0.46 0.64 16 13 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 14 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.49 16.84 8.13 71.44 0.58 17.42 16 19 O -0.50 -22.38 17.21 21.62 0.37 -22.01 16 20 O -0.36 -10.32 10.76 -50.14 -0.54 -10.86 16 21 H 0.06 0.81 8.12 -2.38 -0.02 0.79 16 22 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.55 7.65 -2.39 -0.02 1.53 16 26 H 0.36 10.86 8.34 -89.69 -0.75 10.11 16 27 H 0.05 2.27 7.33 -2.38 -0.02 2.25 16 28 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 31 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -76.57 267.36 2.49 -74.08 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.37 Total: 4.38 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.07 Total: -8.88 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.81 Total: -84.09 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.17 Total: -32.87 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.57 2.49 -74.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379393812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.142 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds