Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99927 * 2 1 4 4 O 1.20826 * 120.00267 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99944 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47518 * 299.99267 * 5 3 2 7 7 C 1.53005 * 109.47351 * 59.99736 * 5 3 2 8 8 N 1.46500 * 109.47352 * 179.97438 * 5 3 2 9 9 C 1.36935 * 120.00458 * 121.59841 * 8 5 3 10 10 H 1.07999 * 120.00698 * 212.86772 * 9 8 5 11 11 C 1.38817 * 119.99580 * 32.86906 * 9 8 5 12 12 N 1.31619 * 119.99810 * 17.31726 * 11 9 8 13 13 Si 1.86802 * 119.99975 * 197.31253 * 11 9 8 14 14 H 1.48492 * 109.46954 * 90.00043 * 13 11 9 15 15 H 1.48500 * 109.47040 * 210.00301 * 13 11 9 16 16 H 1.48506 * 109.46871 * 329.99939 * 13 11 9 17 17 C 1.46503 * 119.99868 * 301.60336 * 8 5 3 18 18 C 1.53005 * 117.49775 * 193.78793 * 17 8 5 19 19 C 1.53006 * 117.49947 * 125.12669 * 17 8 5 20 20 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47270 * 300.00145 * 1 2 3 22 22 H 1.09004 * 109.47002 * 60.00591 * 1 2 3 23 23 H 1.08998 * 109.46961 * 59.99803 * 7 5 3 24 24 H 1.09000 * 109.47002 * 180.02562 * 7 5 3 25 25 H 1.08996 * 109.46529 * 299.99685 * 7 5 3 26 26 H 0.96999 * 119.99300 * 184.98716 * 12 11 9 27 27 H 1.08997 * 115.55016 * 339.45125 * 17 8 5 28 28 H 1.08993 * 117.49998 * 359.97438 * 18 17 8 29 29 H 1.08993 * 117.49776 * 145.02036 * 18 17 8 30 30 H 1.08995 * 117.49435 * 214.97609 * 19 17 8 31 31 H 1.08998 * 117.49603 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7807 0.8891 7 6 4.1129 0.5814 -1.2502 8 7 3.9817 2.6797 -0.0011 9 6 4.7721 3.1604 1.0085 10 1 4.6648 4.1833 1.3381 11 6 5.7114 2.3329 1.6085 12 7 6.0881 1.2227 1.0101 13 14 6.4408 2.7950 3.2650 14 1 5.6066 2.2202 4.3507 15 1 7.8218 2.2583 3.3648 16 1 6.4738 4.2739 3.3961 17 6 3.5514 3.5704 -1.0817 18 6 4.2631 4.9186 -1.2116 19 6 2.8256 4.8587 -0.6887 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 3.7228 1.0757 -2.1399 24 1 5.2014 0.6381 -1.2503 25 1 3.8039 -0.4638 -1.2501 26 1 6.6889 0.6088 1.4607 27 1 3.2375 3.0764 -2.0013 28 1 5.0511 5.1430 -0.4929 29 1 4.4170 5.3117 -2.2165 30 1 2.0346 5.2124 -1.3498 31 1 2.6680 5.0434 0.3739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379415987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -35.129640 kcal Electronic energy + Delta-G solvation = -15064.383614 eV Core-core repulsion = 12540.995596 eV Total energy + Delta-G solvation = -2523.388018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.62952 -37.14033 -35.44362 -33.86256 -31.54294 -28.88610 -27.13466 -24.32005 -23.25961 -21.27452 -20.53760 -19.39647 -16.75822 -16.65625 -15.90505 -15.47332 -14.71800 -14.41324 -13.87506 -12.95245 -12.78327 -12.74417 -12.02920 -11.81168 -11.61036 -11.14458 -10.96830 -10.85527 -10.70029 -10.52332 -10.28899 -10.15484 -9.97207 -9.59156 -9.29425 -9.15201 -8.51018 -6.70269 -5.95805 -3.47066 3.17842 3.29644 3.39594 3.41064 3.52342 4.38488 5.01633 5.13748 5.32114 5.48627 5.53672 5.68127 5.94116 5.97123 6.14786 6.22889 6.38149 6.44119 6.57676 6.62560 6.76213 7.05784 7.11647 7.15311 7.22510 7.43403 7.72722 8.30395 8.65888 9.05272 9.64040 10.17883 11.08346 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.013131 C = 0.010573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.763404 B = 2131.883759 C = 2647.528245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.428 3.572 4 O -0.506 6.506 5 C 0.202 3.798 6 H 0.129 0.871 7 C -0.138 4.138 8 N -0.530 5.530 9 C -0.259 4.259 10 H 0.070 0.930 11 C 0.012 3.988 12 N -0.890 5.890 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.137 3.863 18 C -0.200 4.200 19 C -0.206 4.206 20 H 0.089 0.911 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.031 0.969 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.258 0.742 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -2.014 -2.888 6.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.287 6.287 3 C 0.269 3.731 4 O -0.392 6.392 5 C 0.092 3.908 6 H 0.146 0.854 7 C -0.197 4.197 8 N -0.246 5.246 9 C -0.388 4.388 10 H 0.088 0.912 11 C -0.188 4.188 12 N -0.532 5.532 13 Si 0.733 3.267 14 H -0.212 1.212 15 H -0.215 1.215 16 H -0.201 1.201 17 C 0.028 3.972 18 C -0.239 4.239 19 C -0.247 4.247 20 H 0.107 0.893 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.740 -1.821 -2.852 6.664 hybrid contribution -0.033 0.309 0.933 0.984 sum -5.773 -1.513 -1.919 6.269 Atomic orbital electron populations 1.23044 0.79121 1.02292 1.01634 1.86653 1.21503 1.35760 1.84807 1.26725 0.94571 0.80585 0.71210 1.90562 1.67150 1.36327 1.45127 1.20078 0.81228 0.87560 1.01945 0.85396 1.22018 1.04254 0.97941 0.95495 1.43159 1.53666 1.04755 1.23034 1.19094 1.10526 0.98491 1.10687 0.91212 1.25167 0.95573 0.98309 0.99724 1.70022 1.35167 1.12663 1.35388 0.86266 0.78141 0.78439 0.83866 1.21191 1.21461 1.20145 1.20842 0.99590 0.85076 0.91643 1.23189 0.96059 1.03809 1.00848 1.23174 0.93493 1.07274 1.00720 0.89274 0.92782 0.92845 0.94966 0.89014 0.93445 0.93150 0.89734 0.88348 0.90776 0.91097 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -7.09 10.47 -39.24 -0.41 -7.50 16 3 C 0.43 9.46 7.15 36.00 0.26 9.72 16 4 O -0.51 -12.03 14.64 -18.75 -0.27 -12.31 16 5 C 0.20 4.72 2.29 -69.08 -0.16 4.56 16 6 H 0.13 3.27 6.09 -51.93 -0.32 2.95 16 7 C -0.14 -2.89 8.99 37.16 0.33 -2.56 16 8 N -0.53 -13.23 2.50 -159.45 -0.40 -13.63 16 9 C -0.26 -6.90 8.27 -15.06 -0.12 -7.02 16 10 H 0.07 1.89 6.98 -52.49 -0.37 1.52 16 11 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 12 N -0.89 -23.71 10.45 55.49 0.58 -23.13 16 13 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.14 3.10 4.75 -67.92 -0.32 2.78 16 18 C -0.20 -4.15 9.79 -26.69 -0.26 -4.41 16 19 C -0.21 -4.36 9.73 -26.69 -0.26 -4.62 16 20 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.03 0.63 6.98 -51.93 -0.36 0.26 16 24 H 0.09 2.11 7.24 -51.93 -0.38 1.73 16 25 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 26 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 27 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 28 H 0.10 2.19 6.84 -51.93 -0.35 1.83 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.93 8.06 -51.93 -0.42 1.51 16 LS Contribution 261.69 15.07 3.94 3.94 Total: -1.00 -28.40 261.69 -5.37 -33.77 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.23 Total: 2.69 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 0.45 Total: 0.25 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.18 Total: -36.76 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.69 Total: -19.81 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.40 -5.37 -33.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379415987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.362 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds