Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00257 * 2 1 4 4 O 1.20834 * 119.99864 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00239 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46710 * 60.00725 * 5 3 2 7 7 C 1.53000 * 109.47486 * 300.00665 * 5 3 2 8 8 N 1.46498 * 109.47189 * 180.02562 * 5 3 2 9 9 C 1.36939 * 120.00039 * 240.00207 * 8 5 3 10 10 H 1.08002 * 119.99966 * 53.07434 * 9 8 5 11 11 C 1.38809 * 120.00134 * 233.07229 * 9 8 5 12 12 N 1.31625 * 120.00142 * 200.15431 * 11 9 8 13 13 Si 1.86799 * 119.99968 * 20.16251 * 11 9 8 14 14 H 1.48491 * 109.47536 * 88.67664 * 13 11 9 15 15 H 1.48502 * 109.46958 * 208.67901 * 13 11 9 16 16 H 1.48504 * 109.46871 * 328.67098 * 13 11 9 17 17 C 1.46496 * 120.00146 * 60.00154 * 8 5 3 18 18 C 1.52998 * 117.52107 * 177.47347 * 17 8 5 19 19 C 1.52995 * 59.99984 * 107.48626 * 18 17 8 20 20 H 1.08997 * 109.47280 * 59.99275 * 1 2 3 21 21 H 1.08996 * 109.47017 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47198 * 299.99659 * 1 2 3 23 23 H 1.08999 * 109.46937 * 59.99873 * 7 5 3 24 24 H 1.09000 * 109.47342 * 179.97438 * 7 5 3 25 25 H 1.09000 * 109.47084 * 300.00210 * 7 5 3 26 26 H 0.97000 * 119.99901 * 179.97438 * 12 11 9 27 27 H 1.09005 * 115.54559 * 31.78008 * 17 8 5 28 28 H 1.09006 * 117.50190 * 214.97545 * 18 17 8 29 29 H 1.09001 * 117.50023 * 359.97438 * 18 17 8 30 30 H 1.09002 * 117.49599 * 252.51641 * 19 18 17 31 31 H 1.08994 * 117.50030 * 107.49067 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7806 -0.8893 7 6 4.1130 0.5814 1.2501 8 7 3.9817 2.6797 0.0011 9 6 4.7448 3.1684 -1.0256 10 1 4.4217 3.0384 -2.0479 11 6 5.9336 3.8309 -0.7523 12 7 6.4626 4.6321 -1.6528 13 14 6.7828 3.5853 0.8932 14 1 7.7057 2.4254 0.8058 15 1 7.5538 4.8064 1.2394 16 1 5.7638 3.3293 1.9427 17 6 3.5807 3.5617 1.0999 18 6 4.0949 5.0024 1.0735 19 6 2.6240 4.7095 0.7713 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.8039 -0.4639 1.2500 24 1 5.2015 0.6380 1.2502 25 1 3.7229 1.0755 2.1399 26 1 7.2931 5.0953 -1.4617 27 1 3.4763 3.0823 2.0733 28 1 4.3287 5.4710 2.0296 29 1 4.7322 5.2942 0.2387 30 1 2.2932 4.8086 -0.2625 31 1 1.8901 4.9853 1.5285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379415988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -26.970663 kcal Electronic energy + Delta-G solvation = -15148.917531 eV Core-core repulsion = 12625.883313 eV Total energy + Delta-G solvation = -2523.034218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87179 -37.39439 -35.65819 -33.63532 -32.19331 -29.29818 -27.35325 -24.40168 -23.38509 -21.44915 -20.74165 -19.13504 -16.99177 -16.69877 -16.28480 -15.82719 -14.93838 -14.60942 -13.60570 -13.22801 -13.02007 -12.89497 -12.51912 -12.05409 -11.79799 -11.54209 -11.40985 -10.95012 -10.66869 -10.55073 -10.34012 -10.22603 -9.85362 -9.55809 -9.45559 -9.00363 -8.35779 -6.61936 -6.10161 -3.73285 2.92711 3.25540 3.37199 3.46296 3.54653 4.48705 4.76528 5.01688 5.25293 5.33575 5.38642 5.43654 5.69676 5.79117 5.84338 5.99993 6.12208 6.21208 6.32896 6.44001 6.60361 6.66728 6.71038 6.94750 7.19638 7.42099 8.02038 8.31219 8.53288 8.92786 9.56427 10.02689 11.00660 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039391 B = 0.011806 C = 0.010966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.655004 B = 2371.183518 C = 2552.849687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.433 3.567 4 O -0.489 6.489 5 C 0.182 3.818 6 H 0.112 0.888 7 C -0.158 4.158 8 N -0.548 5.548 9 C -0.293 4.293 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.877 3.123 14 H -0.290 1.290 15 H -0.296 1.296 16 H -0.251 1.251 17 C 0.123 3.877 18 C -0.209 4.209 19 C -0.185 4.185 20 H 0.056 0.944 21 H 0.091 0.909 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -7.680 5.937 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.288 6.288 3 C 0.273 3.727 4 O -0.373 6.373 5 C 0.073 3.927 6 H 0.130 0.870 7 C -0.217 4.217 8 N -0.267 5.267 9 C -0.421 4.421 10 H 0.089 0.911 11 C -0.140 4.140 12 N -0.527 5.527 13 Si 0.705 3.295 14 H -0.217 1.217 15 H -0.223 1.223 16 H -0.175 1.175 17 C 0.016 3.984 18 C -0.246 4.246 19 C -0.225 4.225 20 H 0.075 0.925 21 H 0.109 0.891 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.798 -7.240 5.856 11.529 hybrid contribution 0.230 0.176 0.797 0.848 sum -6.569 -7.064 6.653 11.718 Atomic orbital electron populations 1.23071 0.78376 1.02525 1.01927 1.86582 1.22010 1.35343 1.84914 1.25878 0.93879 0.80830 0.72120 1.90626 1.66764 1.36143 1.43766 1.20273 0.84010 0.88410 1.00039 0.87031 1.22207 1.02199 0.99575 0.97708 1.43377 1.57004 1.02314 1.23996 1.18513 0.99963 1.36424 0.87179 0.91117 1.25731 0.95736 0.95445 0.97046 1.69908 1.20398 1.26598 1.35825 0.86911 0.79496 0.76909 0.86221 1.21695 1.22318 1.17478 1.21044 1.00590 0.85738 0.91042 1.23537 0.98794 0.99765 1.02552 1.23134 0.91308 1.06526 1.01511 0.92529 0.89058 0.92645 0.92013 0.91275 0.93003 0.92356 0.89973 0.91020 0.86088 0.89180 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.09 10.47 -39.25 -0.41 -6.50 16 3 C 0.43 8.44 7.15 36.00 0.26 8.70 16 4 O -0.49 -10.80 14.06 -18.76 -0.26 -11.07 16 5 C 0.18 3.65 3.23 -69.09 -0.22 3.42 16 6 H 0.11 2.17 7.89 -51.93 -0.41 1.76 16 7 C -0.16 -2.67 9.12 37.16 0.34 -2.33 16 8 N -0.55 -13.00 1.74 -159.46 -0.28 -13.28 16 9 C -0.29 -8.00 9.12 -15.06 -0.14 -8.14 16 10 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 11 C 0.06 1.77 3.51 -17.43 -0.06 1.71 16 12 N -0.89 -26.14 13.97 55.49 0.78 -25.36 16 13 Si 0.88 21.43 25.45 -169.99 -4.33 17.10 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.25 -5.81 5.41 56.52 0.31 -5.51 16 17 C 0.12 2.79 3.02 -67.94 -0.21 2.58 16 18 C -0.21 -4.78 7.09 -26.73 -0.19 -4.97 16 19 C -0.18 -4.11 9.18 -26.74 -0.25 -4.36 16 20 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.87 6.88 -51.93 -0.36 0.51 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.08 1.75 6.90 -51.93 -0.36 1.39 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.12 3.16 5.04 -51.93 -0.26 2.90 16 30 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 255.46 15.07 3.85 3.85 Total: -1.00 -30.44 255.46 -4.47 -34.92 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.42 Total: 2.20 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.60 Total: -1.86 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.50 Total: -38.64 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.67 Total: -17.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.33 Total: 17.10 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.44 -4.47 -34.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379415988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.946 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds