Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.99175 * 2 1 4 4 C 1.54100 * 109.88056 * 238.91395 * 2 1 3 5 5 C 1.54814 * 104.18654 * 238.54757 * 4 2 1 6 6 H 1.08998 * 110.91239 * 97.34895 * 5 4 2 7 7 N 1.46502 * 110.90520 * 220.92575 * 5 4 2 8 8 C 1.46492 * 120.00494 * 59.99500 * 7 5 4 9 9 C 1.34784 * 119.99247 * 239.99696 * 7 5 4 10 10 O 1.21681 * 120.00577 * 0.02562 * 9 7 5 11 11 C 1.46377 * 119.99300 * 179.97438 * 9 7 5 12 12 H 1.07991 * 120.00498 * 359.72727 * 11 9 7 13 13 C 1.40055 * 119.99662 * 180.02562 * 11 9 7 14 14 N 1.30678 * 119.99850 * 359.72880 * 13 11 9 15 15 Si 1.86798 * 119.99788 * 179.72946 * 13 11 9 16 16 H 1.48498 * 109.47416 * 59.99904 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99489 * 15 13 11 19 19 C 1.54994 * 102.09186 * 339.11607 * 5 4 2 20 20 O 1.43749 * 109.87839 * 121.08090 * 2 1 3 21 21 H 1.09009 * 109.47004 * 181.08820 * 1 2 3 22 22 H 1.08998 * 109.47408 * 301.08666 * 1 2 3 23 23 H 1.09000 * 109.47180 * 61.09027 * 1 2 3 24 24 H 1.08996 * 110.48899 * 119.87202 * 4 2 1 25 25 H 1.09000 * 110.59945 * 357.27281 * 4 2 1 26 26 H 1.09000 * 109.47190 * 270.00190 * 8 7 5 27 27 H 1.09001 * 109.47170 * 29.99802 * 8 7 5 28 28 H 1.09000 * 109.47181 * 150.00413 * 8 7 5 29 29 H 0.97000 * 119.99610 * 180.02562 * 14 13 11 30 30 H 1.09001 * 110.62010 * 155.52654 * 19 5 4 31 31 H 1.09000 * 110.62254 * 278.52625 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0540 -0.7482 -1.2410 5 6 2.9195 -1.8915 -0.6574 6 1 2.3542 -2.8222 -0.6102 7 7 4.1476 -2.0674 -1.4367 8 6 5.1003 -0.9617 -1.5623 9 6 4.4007 -3.2468 -2.0381 10 8 3.6092 -4.1651 -1.9343 11 6 5.6275 -3.4225 -2.8172 12 1 6.3275 -2.6058 -2.9137 13 6 5.8903 -4.6477 -3.4426 14 7 5.0430 -5.6357 -3.3262 15 14 7.4521 -4.8695 -4.4430 16 1 8.6340 -4.6511 -3.5708 17 1 7.4933 -6.2465 -4.9976 18 1 7.4703 -3.8872 -5.5566 19 6 3.2379 -1.3641 0.7648 20 8 2.0188 -0.6979 1.1578 21 1 -0.3633 -1.0276 0.0195 22 1 -0.3634 0.5306 0.8800 23 1 -0.3633 0.4968 -0.8996 24 1 2.6620 -0.0860 -1.8573 25 1 1.2260 -1.1550 -1.8216 26 1 4.8479 -0.3622 -2.4369 27 1 5.0536 -0.3387 -0.6691 28 1 6.1081 -1.3615 -1.6743 29 1 5.2253 -6.4845 -3.7591 30 1 3.4585 -2.1906 1.4403 31 1 4.0685 -0.6588 0.7357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401332232.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -81.959573 kcal Electronic energy + Delta-G solvation = -14663.210068 eV Core-core repulsion = 12137.791352 eV Total energy + Delta-G solvation = -2525.418716 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48874 -37.21095 -33.98039 -32.49527 -31.91405 -29.91178 -26.20563 -25.78163 -25.50723 -21.56946 -20.82918 -18.94129 -16.73714 -16.08792 -15.69387 -15.17782 -15.01316 -14.10865 -13.89653 -13.59461 -13.13138 -12.43954 -12.25815 -12.03382 -11.80006 -11.54956 -11.49481 -11.19152 -11.04194 -10.85372 -10.57995 -10.32345 -10.21385 -10.15176 -9.41850 -8.88556 -7.65220 -7.27846 -6.23761 -4.69943 3.12769 3.17936 3.19573 3.95471 4.13454 4.48368 4.60530 5.01182 5.05638 5.28645 5.45037 5.46891 5.59337 5.74478 5.79647 5.89258 6.02593 6.05851 6.14533 6.23240 6.33250 6.48214 6.51124 6.61014 7.15478 7.40273 7.55701 8.07926 8.29343 8.97320 9.35186 10.52155 10.70710 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062393 B = 0.007523 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.659248 B = 3721.106706 C = 3867.534528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 H 0.062 0.938 4 C -0.165 4.165 5 C 0.123 3.877 6 H 0.107 0.893 7 N -0.637 5.637 8 C 0.097 3.903 9 C 0.556 3.444 10 O -0.577 6.577 11 C -0.543 4.543 12 H 0.073 0.927 13 C 0.087 3.913 14 N -0.766 5.766 15 Si 0.908 3.092 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.034 3.966 20 O -0.379 6.379 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.270 0.730 30 H 0.092 0.908 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 10.051 3.400 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.080 0.920 4 C -0.204 4.204 5 C 0.016 3.984 6 H 0.125 0.875 7 N -0.375 5.375 8 C -0.047 4.047 9 C 0.362 3.638 10 O -0.459 6.459 11 C -0.579 4.579 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.395 5.395 15 Si 0.733 3.267 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.043 4.043 20 O -0.297 6.297 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.695 9.330 3.610 10.361 hybrid contribution 0.945 0.071 -0.756 1.212 sum -1.750 9.401 2.854 9.980 Atomic orbital electron populations 1.21918 0.94134 1.02831 1.01743 1.22650 0.94810 0.95397 0.85588 0.92017 1.23359 1.00746 0.98664 0.97629 1.22118 0.88120 0.98796 0.89324 0.87505 1.47896 1.19946 1.14453 1.55237 1.21429 0.94613 0.89982 0.98672 1.18305 0.87356 0.79261 0.78853 1.90592 1.50270 1.40134 1.64923 1.20964 1.05161 0.98954 1.32828 0.90918 1.25755 0.97064 0.95313 0.95208 1.70013 1.33231 1.02283 1.33955 0.86425 0.82170 0.77894 0.80238 1.19212 1.20509 1.19252 1.23961 0.87046 0.96374 0.96968 1.88836 1.40151 1.67764 1.32990 0.91777 0.92369 0.91551 0.90618 0.90499 0.94979 0.93793 0.90696 0.91965 0.89001 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.36 37.16 0.35 -1.48 16 2 C 0.07 1.07 4.06 -26.16 -0.11 0.96 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.16 -2.72 6.26 -25.20 -0.16 -2.88 16 5 C 0.12 2.46 3.54 -65.92 -0.23 2.22 16 6 H 0.11 2.47 7.01 -51.93 -0.36 2.10 16 7 N -0.64 -14.38 2.90 -173.30 -0.50 -14.88 16 8 C 0.10 1.77 9.14 59.84 0.55 2.32 16 9 C 0.56 15.74 7.61 -12.98 -0.10 15.64 16 10 O -0.58 -18.60 14.40 5.21 0.07 -18.52 16 11 C -0.54 -15.06 8.74 -35.63 -0.31 -15.38 16 12 H 0.07 1.83 6.00 -52.49 -0.31 1.51 16 13 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 14 N -0.77 -22.81 11.83 55.55 0.66 -22.15 16 15 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 C 0.03 0.59 7.25 38.21 0.28 0.87 16 20 O -0.38 -6.39 11.19 -35.23 -0.39 -6.78 16 21 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.21 7.11 -51.93 -0.37 0.84 16 25 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 26 H 0.03 0.55 7.93 -51.93 -0.41 0.14 16 27 H 0.04 0.67 5.95 -51.93 -0.31 0.36 16 28 H 0.07 1.40 6.10 -51.93 -0.32 1.08 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.06 0.98 5.97 -51.93 -0.31 0.67 16 LS Contribution 255.40 15.07 3.85 3.85 Total: -1.00 -33.05 255.40 -5.21 -38.26 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.04 Total: 0.84 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 0.17 Total: 4.56 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.16 Total: -37.03 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.32 Total: -25.30 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.05 -5.21 -38.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401332232.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.695 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds