Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.82460 * 2 1 4 4 C 1.54379 * 109.83272 * 239.10752 * 2 1 3 5 5 C 1.55536 * 102.15099 * 219.05839 * 4 2 1 6 6 H 1.09004 * 111.17534 * 276.21201 * 5 4 2 7 7 N 1.46492 * 111.10608 * 152.06841 * 5 4 2 8 8 C 1.46506 * 119.99931 * 306.99636 * 7 5 4 9 9 C 1.34780 * 120.00160 * 126.98968 * 7 5 4 10 10 O 1.21684 * 119.99906 * 0.02562 * 9 7 5 11 11 C 1.46376 * 119.99855 * 179.97438 * 9 7 5 12 12 H 1.07996 * 120.00288 * 355.24982 * 11 9 7 13 13 C 1.40046 * 119.99712 * 175.24264 * 11 9 7 14 14 N 1.30672 * 120.00115 * 6.28873 * 13 11 9 15 15 Si 1.86799 * 120.00278 * 186.28324 * 13 11 9 16 16 H 1.48497 * 109.47281 * 94.98193 * 15 13 11 17 17 H 1.48499 * 109.47607 * 214.98803 * 15 13 11 18 18 H 1.48506 * 109.46821 * 334.98494 * 15 13 11 19 19 C 1.54950 * 100.94876 * 34.15196 * 5 4 2 20 20 O 1.43243 * 109.82537 * 120.88297 * 2 1 3 21 21 H 1.08998 * 109.47621 * 300.70735 * 1 2 3 22 22 H 1.09000 * 109.46696 * 60.70435 * 1 2 3 23 23 H 1.08994 * 109.47425 * 180.69929 * 1 2 3 24 24 H 1.08994 * 110.85107 * 337.23521 * 4 2 1 25 25 H 1.09001 * 110.84466 * 100.85551 * 4 2 1 26 26 H 1.08996 * 109.47355 * 89.99431 * 8 7 5 27 27 H 1.09001 * 109.46811 * 209.99615 * 8 7 5 28 28 H 1.09003 * 109.46842 * 329.99590 * 8 7 5 29 29 H 0.96998 * 120.00562 * 179.97438 * 14 13 11 30 30 H 1.08999 * 110.30966 * 204.61994 * 19 5 4 31 31 H 1.09001 * 110.38608 * 82.49287 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7456 -1.2462 5 6 3.2754 -1.5202 -0.6748 6 1 4.1641 -0.8896 -0.6481 7 7 3.5252 -2.7468 -1.4358 8 6 2.4423 -3.7106 -1.6478 9 6 4.7511 -2.9887 -1.9409 10 8 5.6506 -2.1884 -1.7645 11 6 5.0007 -4.2146 -2.7008 12 1 4.2254 -4.9609 -2.7917 13 6 6.2449 -4.4197 -3.3101 14 7 7.2221 -3.5780 -3.0996 15 14 6.5078 -5.8964 -4.4234 16 1 6.2790 -5.4985 -5.8357 17 1 7.8989 -6.3923 -4.2680 18 1 5.5543 -6.9725 -4.0516 19 6 2.7764 -1.8427 0.7562 20 8 2.0158 -0.6917 1.1565 21 1 -0.3634 0.5248 0.8835 22 1 -0.3633 0.5029 -0.8963 23 1 -0.3634 -1.0275 0.0125 24 1 1.3018 -1.4348 -1.6305 25 1 2.3658 -0.0410 -2.0171 26 1 1.9120 -3.4647 -2.5678 27 1 2.8596 -4.7145 -1.7262 28 1 1.7497 -3.6696 -0.8072 29 1 8.0840 -3.7202 -3.5213 30 1 3.6223 -1.9894 1.4278 31 1 2.1433 -2.7299 0.7467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401332237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -83.579044 kcal Electronic energy + Delta-G solvation = -14667.159289 eV Core-core repulsion = 12141.670348 eV Total energy + Delta-G solvation = -2525.488942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49424 -37.23598 -33.99805 -32.51164 -31.86280 -29.97384 -26.24547 -25.81802 -25.59936 -21.43176 -20.81532 -18.84850 -16.99171 -16.18842 -15.82001 -15.33257 -14.46893 -14.17223 -13.80524 -13.45349 -13.31457 -12.56048 -12.42066 -12.18565 -11.65753 -11.56874 -11.47349 -11.17756 -11.06224 -10.85343 -10.68379 -10.34805 -10.25073 -10.18000 -9.23831 -8.89690 -7.66583 -7.30111 -6.25917 -4.70482 3.10473 3.17885 3.21081 3.93288 4.12113 4.44533 4.57517 4.97028 5.08450 5.25790 5.44188 5.48419 5.59879 5.71046 5.73513 5.89452 5.98749 6.07263 6.12741 6.24425 6.30685 6.44866 6.47779 6.63386 7.26522 7.40075 7.54288 8.06933 8.28291 8.96603 9.33457 10.50419 10.69019 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063414 B = 0.007530 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.436270 B = 3717.449463 C = 3889.007696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 H 0.077 0.923 4 C -0.163 4.163 5 C 0.122 3.878 6 H 0.108 0.892 7 N -0.635 5.635 8 C 0.099 3.901 9 C 0.556 3.444 10 O -0.577 6.577 11 C -0.543 4.543 12 H 0.074 0.926 13 C 0.087 3.913 14 N -0.766 5.766 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.038 3.962 20 O -0.383 6.383 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 1.722 2.500 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.094 0.906 4 C -0.202 4.202 5 C 0.016 3.984 6 H 0.126 0.874 7 N -0.373 5.373 8 C -0.046 4.046 9 C 0.362 3.638 10 O -0.460 6.460 11 C -0.579 4.579 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.394 5.394 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.040 4.040 20 O -0.302 6.302 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.984 2.266 2.770 10.606 hybrid contribution 0.007 -0.841 -0.824 1.178 sum -9.976 1.425 1.946 10.264 Atomic orbital electron populations 1.22120 0.95383 1.02315 1.01792 1.22626 0.93861 0.96306 0.85437 0.90558 1.23549 0.99013 1.00010 0.97660 1.22289 0.97790 0.88980 0.89383 0.87367 1.47847 1.11965 1.19631 1.57875 1.21418 0.90306 0.94352 0.98477 1.18326 0.79043 0.87601 0.78818 1.90593 1.42770 1.50057 1.62546 1.20998 0.99357 1.03521 1.34021 0.90802 1.25750 0.95293 0.96699 0.95573 1.70023 1.01872 1.33179 1.34327 0.86352 0.78208 0.81669 0.80520 1.19764 1.20403 1.18815 1.23778 0.94870 0.88261 0.97081 1.88386 1.70879 1.40929 1.30001 0.92321 0.91772 0.92366 0.90414 0.90227 0.94881 0.90732 0.93861 0.92014 0.89753 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.44 37.16 0.35 -1.51 16 2 C 0.08 1.10 4.15 -26.01 -0.11 0.99 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.16 -2.62 6.12 -24.66 -0.15 -2.77 16 5 C 0.12 2.42 3.52 -65.56 -0.23 2.19 16 6 H 0.11 2.46 7.02 -51.93 -0.36 2.10 16 7 N -0.64 -14.30 2.92 -172.88 -0.50 -14.80 16 8 C 0.10 1.80 8.86 59.85 0.53 2.33 16 9 C 0.56 15.68 7.61 -12.99 -0.10 15.58 16 10 O -0.58 -18.54 14.42 5.20 0.08 -18.46 16 11 C -0.54 -15.03 8.76 -35.63 -0.31 -15.34 16 12 H 0.07 1.86 5.95 -52.49 -0.31 1.55 16 13 C 0.09 2.39 5.49 -17.37 -0.10 2.30 16 14 N -0.77 -22.72 11.85 55.55 0.66 -22.06 16 15 Si 0.91 19.81 29.56 -169.99 -5.03 14.78 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 19 C 0.04 0.66 7.35 38.19 0.28 0.95 16 20 O -0.38 -6.48 11.02 -35.23 -0.39 -6.87 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.18 6.75 -51.93 -0.35 0.83 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 27 H 0.07 1.40 6.04 -51.93 -0.31 1.08 16 28 H 0.04 0.67 6.32 -51.93 -0.33 0.34 16 29 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.06 0.98 6.29 -51.93 -0.33 0.65 16 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -32.89 255.97 -5.25 -38.14 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.08 Total: 0.70 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 0.17 Total: 4.72 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.15 Total: -36.86 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.31 Total: -25.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.89 -5.25 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401332237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.442 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds