Wall clock time and date at job start Mon Mar 30 2020 02:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.82460 * 2 1 4 4 C 1.54379 * 109.83272 * 239.10752 * 2 1 3 5 5 C 1.55536 * 102.15099 * 219.05839 * 4 2 1 6 6 H 1.09004 * 111.17534 * 276.21201 * 5 4 2 7 7 N 1.46492 * 111.10608 * 152.06841 * 5 4 2 8 8 C 1.46506 * 119.99931 * 306.99636 * 7 5 4 9 9 C 1.34780 * 120.00160 * 126.98968 * 7 5 4 10 10 O 1.21684 * 119.99906 * 0.02562 * 9 7 5 11 11 C 1.46376 * 119.99855 * 179.97438 * 9 7 5 12 12 H 1.07996 * 120.00288 * 355.24982 * 11 9 7 13 13 C 1.40046 * 119.99712 * 175.24264 * 11 9 7 14 14 N 1.30672 * 120.00115 * 6.28873 * 13 11 9 15 15 Si 1.86799 * 120.00278 * 186.28324 * 13 11 9 16 16 H 1.48497 * 109.47281 * 94.98193 * 15 13 11 17 17 H 1.48499 * 109.47607 * 214.98803 * 15 13 11 18 18 H 1.48506 * 109.46821 * 334.98494 * 15 13 11 19 19 C 1.54950 * 100.94876 * 34.15196 * 5 4 2 20 20 O 1.43243 * 109.82537 * 120.88297 * 2 1 3 21 21 H 1.08998 * 109.47621 * 300.70735 * 1 2 3 22 22 H 1.09000 * 109.46696 * 60.70435 * 1 2 3 23 23 H 1.08994 * 109.47425 * 180.69929 * 1 2 3 24 24 H 1.08994 * 110.85107 * 337.23521 * 4 2 1 25 25 H 1.09001 * 110.84466 * 100.85551 * 4 2 1 26 26 H 1.08996 * 109.47355 * 89.99431 * 8 7 5 27 27 H 1.09001 * 109.46811 * 209.99615 * 8 7 5 28 28 H 1.09003 * 109.46842 * 329.99590 * 8 7 5 29 29 H 0.96998 * 120.00562 * 179.97438 * 14 13 11 30 30 H 1.08999 * 110.30966 * 204.61994 * 19 5 4 31 31 H 1.09001 * 110.38608 * 82.49287 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7456 -1.2462 5 6 3.2754 -1.5202 -0.6748 6 1 4.1641 -0.8896 -0.6481 7 7 3.5252 -2.7468 -1.4358 8 6 2.4423 -3.7106 -1.6478 9 6 4.7511 -2.9887 -1.9409 10 8 5.6506 -2.1884 -1.7645 11 6 5.0007 -4.2146 -2.7008 12 1 4.2254 -4.9609 -2.7917 13 6 6.2449 -4.4197 -3.3101 14 7 7.2221 -3.5780 -3.0996 15 14 6.5078 -5.8964 -4.4234 16 1 6.2790 -5.4985 -5.8357 17 1 7.8989 -6.3923 -4.2680 18 1 5.5543 -6.9725 -4.0516 19 6 2.7764 -1.8427 0.7562 20 8 2.0158 -0.6917 1.1565 21 1 -0.3634 0.5248 0.8835 22 1 -0.3633 0.5029 -0.8963 23 1 -0.3634 -1.0275 0.0125 24 1 1.3018 -1.4348 -1.6305 25 1 2.3658 -0.0410 -2.0171 26 1 1.9120 -3.4647 -2.5678 27 1 2.8596 -4.7145 -1.7262 28 1 1.7497 -3.6696 -0.8072 29 1 8.0840 -3.7202 -3.5213 30 1 3.6223 -1.9894 1.4278 31 1 2.1433 -2.7299 0.7467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401332237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:38 Heat of formation + Delta-G solvation = -107.361573 kcal Electronic energy + Delta-G solvation = -14668.190577 eV Core-core repulsion = 12141.670348 eV Total energy + Delta-G solvation = -2526.520229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95606 -39.11859 -35.85427 -34.63455 -33.06229 -31.48886 -28.22874 -27.33516 -26.97067 -23.20082 -22.02298 -20.60997 -18.69866 -18.03960 -17.37945 -17.05070 -15.95514 -15.89241 -15.46985 -14.94310 -14.71082 -14.06453 -13.79609 -13.61067 -13.27438 -13.16907 -13.03490 -12.82418 -12.72042 -12.27432 -12.23073 -12.00975 -11.94882 -11.64835 -10.94382 -10.53720 -9.84275 -9.12545 -8.31823 -6.86377 1.40428 1.41060 1.57394 2.21451 2.41974 2.55851 3.04393 3.47306 3.70075 3.91159 3.92890 4.09162 4.18370 4.43097 4.51475 4.66434 4.73614 4.78720 4.83053 4.94039 5.00887 5.06171 5.18181 5.33281 5.37081 5.71242 5.97375 6.12364 6.35944 6.85836 7.36004 8.42805 8.64578 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063414 B = 0.007530 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.436270 B = 3717.449463 C = 3889.007696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 H 0.083 0.917 4 C -0.151 4.151 5 C 0.109 3.891 6 H 0.066 0.934 7 N -0.636 5.636 8 C 0.096 3.904 9 C 0.537 3.463 10 O -0.633 6.633 11 C -0.566 4.566 12 H 0.097 0.903 13 C 0.028 3.972 14 N -0.822 5.822 15 Si 0.997 3.003 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.245 1.245 19 C 0.050 3.950 20 O -0.392 6.392 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.274 0.726 30 H 0.073 0.927 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 0.447 1.919 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.101 0.899 4 C -0.190 4.190 5 C 0.004 3.996 6 H 0.084 0.916 7 N -0.372 5.372 8 C -0.047 4.047 9 C 0.344 3.656 10 O -0.521 6.521 11 C -0.602 4.602 12 H 0.115 0.885 13 C -0.188 4.188 14 N -0.452 5.452 15 Si 0.817 3.183 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.168 1.168 19 C -0.027 4.027 20 O -0.311 6.311 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.435 0.993 2.212 12.669 hybrid contribution 0.697 -0.366 -0.586 0.982 sum -11.738 0.627 1.626 11.866 Atomic orbital electron populations 1.22079 0.92531 1.02995 1.03286 1.22835 0.96000 0.96020 0.83640 0.89884 1.23482 0.97313 0.99842 0.98333 1.22363 0.97892 0.88050 0.91344 0.91604 1.47654 1.11429 1.21062 1.57078 1.21616 0.89450 0.92892 1.00727 1.18752 0.80218 0.87627 0.79051 1.90544 1.45219 1.51666 1.64635 1.21537 1.00502 1.04017 1.34187 0.88526 1.27037 0.94540 1.00252 0.96931 1.70201 1.02799 1.36094 1.36071 0.85009 0.78522 0.77059 0.77744 1.18867 1.19937 1.16757 1.23583 0.94938 0.89259 0.94968 1.88379 1.70788 1.40828 1.31106 0.91445 0.89736 0.92064 0.88745 0.90457 0.93252 0.91312 0.90500 0.91580 0.90917 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.44 71.98 0.68 -2.33 16 2 C 0.07 1.94 4.15 31.06 0.13 2.07 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.15 -4.62 6.12 31.94 0.20 -4.42 16 5 C 0.11 4.39 3.52 46.53 0.16 4.56 16 6 H 0.07 3.19 7.02 -2.38 -0.02 3.17 16 7 N -0.64 -28.66 2.92 -819.08 -2.39 -31.05 16 8 C 0.10 3.27 8.86 127.77 1.13 4.41 16 9 C 0.54 31.19 7.61 86.36 0.66 31.85 16 10 O -0.63 -42.88 14.42 -4.30 -0.06 -42.95 16 11 C -0.57 -31.55 8.76 24.83 0.22 -31.33 16 12 H 0.10 4.75 5.95 -2.91 -0.02 4.73 16 13 C 0.03 1.52 5.49 85.30 0.47 1.99 16 14 N -0.82 -50.37 11.85 21.84 0.26 -50.11 16 15 Si 1.00 40.31 29.56 68.60 2.03 42.33 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 18 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 19 C 0.05 1.73 7.35 72.65 0.53 2.26 16 20 O -0.39 -12.65 11.02 -148.98 -1.64 -14.29 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 2.57 6.75 -2.39 -0.02 2.56 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 26 H 0.05 1.54 8.07 -2.39 -0.02 1.52 16 27 H 0.07 2.44 6.04 -2.39 -0.01 2.42 16 28 H 0.08 2.11 6.32 -2.39 -0.02 2.09 16 29 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.08 2.38 6.29 -2.39 -0.02 2.36 16 Total: -1.00 -74.30 255.97 3.49 -70.81 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.12 Total: 16.20 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.18 Total: 9.05 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.13 Total: -81.16 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.70 Total: -57.24 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -74.30 3.49 -70.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401332237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.554 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds