Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47495 * 2 1 4 4 C 1.53089 * 109.47965 * 120.02500 * 2 1 3 5 5 C 1.53187 * 109.15720 * 177.58208 * 4 2 1 6 6 C 1.53175 * 109.04489 * 303.03455 * 5 4 2 7 7 H 1.09000 * 109.57510 * 297.03615 * 6 5 4 8 8 N 1.46498 * 109.51876 * 176.88398 * 6 5 4 9 9 C 1.34776 * 119.99877 * 155.31496 * 8 6 5 10 10 O 1.21685 * 120.00183 * 0.02562 * 9 8 6 11 11 C 1.46378 * 120.00064 * 179.97438 * 9 8 6 12 12 H 1.07999 * 120.00017 * 0.02562 * 11 9 8 13 13 C 1.40053 * 120.00030 * 180.02562 * 11 9 8 14 14 N 1.30668 * 119.99879 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99799 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47264 * 59.99854 * 15 13 11 17 17 H 1.48500 * 109.47180 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47092 * 299.99969 * 15 13 11 19 19 C 1.53092 * 109.16455 * 56.98053 * 6 5 4 20 20 O 1.42900 * 109.47835 * 239.98049 * 2 1 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99737 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99849 * 1 2 3 24 24 H 1.08993 * 109.52213 * 297.49449 * 4 2 1 25 25 H 1.09001 * 109.52307 * 57.69032 * 4 2 1 26 26 H 1.09002 * 109.53580 * 183.16247 * 5 4 2 27 27 H 1.08995 * 109.60596 * 62.94776 * 5 4 2 28 28 H 0.96998 * 120.00325 * 335.31176 * 8 6 5 29 29 H 0.97002 * 119.99728 * 180.02562 * 14 13 11 30 30 H 1.08991 * 109.47978 * 182.40736 * 19 6 5 31 31 H 1.08996 * 109.49156 * 62.37390 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5712 -0.7709 1.2120 6 6 4.0177 -1.4600 -0.0812 7 1 3.6623 -2.4904 -0.0874 8 7 5.4803 -1.4461 -0.1634 9 6 6.1229 -2.3768 -0.8963 10 8 5.4882 -3.2284 -1.4902 11 6 7.5843 -2.3626 -0.9789 12 1 8.1476 -1.6066 -0.4522 13 6 8.2520 -3.3295 -1.7410 14 7 7.5704 -4.2440 -2.3787 15 14 10.1169 -3.3118 -1.8458 16 1 10.6907 -3.4683 -0.4852 17 1 10.5750 -4.4312 -2.7074 18 1 10.5678 -2.0221 -2.4278 19 6 3.4308 -0.7090 -1.2793 20 8 2.0066 -0.6740 -1.1665 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7149 -0.1842 2.1398 25 1 1.6444 -1.7374 1.2710 26 1 3.9392 -1.3328 2.0704 27 1 3.9703 0.2429 1.2415 28 1 5.9862 -0.7670 0.3096 29 1 8.0329 -4.9139 -2.9062 30 1 3.7100 -1.2199 -2.2007 31 1 3.8192 0.3092 -1.2960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401413626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = -128.106083 kcal Electronic energy + Delta-G solvation = -14453.134372 eV Core-core repulsion = 11925.714593 eV Total energy + Delta-G solvation = -2527.419779 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74324 -39.02530 -35.73117 -34.57328 -34.07125 -31.96912 -28.88181 -27.60351 -25.20570 -23.24096 -21.67619 -21.36785 -19.17481 -17.50506 -17.33607 -17.19117 -16.09170 -15.86640 -15.77924 -15.07710 -14.44878 -14.24168 -14.01965 -13.52107 -13.26798 -13.11449 -13.00208 -12.75495 -12.64269 -12.27454 -12.09647 -12.07419 -11.74389 -11.31616 -10.93684 -10.60419 -9.87528 -9.44263 -8.29491 -6.87083 1.40283 1.43915 1.55819 2.24006 2.46054 2.69108 3.21658 3.57264 3.74180 3.83093 4.04992 4.08570 4.17888 4.34408 4.53407 4.70501 4.74421 4.79813 4.86785 4.99945 5.04698 5.19520 5.30323 5.31622 5.34519 5.86524 6.12654 6.23794 6.38363 6.85859 7.54151 8.48685 8.66804 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076937 B = 0.006581 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.845746 B = 4253.907310 C = 4407.876933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.118 4.118 6 C 0.123 3.877 7 H 0.038 0.962 8 N -0.746 5.746 9 C 0.536 3.464 10 O -0.631 6.631 11 C -0.574 4.574 12 H 0.090 0.910 13 C 0.028 3.972 14 N -0.823 5.823 15 Si 1.000 3.000 16 H -0.254 1.254 17 H -0.276 1.276 18 H -0.253 1.253 19 C 0.067 3.933 20 O -0.402 6.402 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.397 0.603 29 H 0.274 0.726 30 H 0.054 0.946 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 10.709 7.963 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.178 4.178 5 C -0.156 4.156 6 C 0.016 3.984 7 H 0.056 0.944 8 N -0.401 5.401 9 C 0.341 3.659 10 O -0.518 6.518 11 C -0.610 4.610 12 H 0.108 0.892 13 C -0.187 4.187 14 N -0.453 5.453 15 Si 0.819 3.181 16 H -0.177 1.177 17 H -0.200 1.200 18 H -0.177 1.177 19 C -0.011 4.011 20 O -0.321 6.321 21 H 0.073 0.927 22 H 0.119 0.881 23 H 0.080 0.920 24 H 0.129 0.871 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.581 9.867 7.296 14.424 hybrid contribution 1.117 -0.141 -0.091 1.130 sum -6.464 9.726 7.204 13.722 Atomic orbital electron populations 1.21784 0.91433 1.02826 1.03630 1.22488 0.96399 0.95423 0.84488 0.91072 1.22209 0.94113 1.01907 0.99525 1.21840 0.96901 1.01480 0.95407 1.21179 0.82290 0.98670 0.96231 0.94374 1.45787 1.04929 1.34357 1.55068 1.18670 0.89348 0.79920 0.77996 1.90567 1.69551 1.41221 1.50464 1.21427 0.90345 1.16113 1.33160 0.89193 1.27011 1.06339 0.93022 0.92367 1.70194 1.39606 1.12355 1.23127 0.85040 0.74601 0.78967 0.79481 1.17743 1.20041 1.17734 1.22751 0.80605 0.99435 0.98356 1.87915 1.20535 1.78843 1.44787 0.92706 0.88150 0.92004 0.87123 0.92206 0.90755 0.89427 0.76855 0.91575 0.92748 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.56 71.98 0.69 -2.00 16 2 C 0.07 1.71 3.26 30.63 0.10 1.81 16 3 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 4 C -0.14 -3.23 5.42 30.69 0.17 -3.06 16 5 C -0.12 -3.28 5.50 30.72 0.17 -3.11 16 6 C 0.12 4.94 2.65 45.08 0.12 5.06 16 7 H 0.04 1.87 7.58 -2.39 -0.02 1.85 16 8 N -0.75 -33.80 5.08 -446.40 -2.27 -36.06 16 9 C 0.54 31.58 7.71 86.36 0.67 32.25 16 10 O -0.63 -43.33 14.69 -4.30 -0.06 -43.39 16 11 C -0.57 -32.71 9.54 24.83 0.24 -32.47 16 12 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 13 C 0.03 1.55 5.50 85.31 0.47 2.02 16 14 N -0.82 -51.27 11.83 21.84 0.26 -51.01 16 15 Si 1.00 41.07 29.56 68.60 2.03 43.10 16 16 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 19 C 0.07 2.63 6.42 72.01 0.46 3.09 16 20 O -0.40 -14.32 10.41 -148.98 -1.55 -15.87 16 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.40 15.13 8.58 -92.71 -0.80 14.33 16 29 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 30 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.29 262.17 1.80 -75.49 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.32 Total: 24.16 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 3.08 Total: 3.59 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.01 Total: -87.07 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -1.61 Total: -59.26 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -77.29 1.80 -75.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401413626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.619 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds