Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.57125 * 2 1 4 4 C 1.53121 * 109.52111 * 120.16146 * 2 1 3 5 5 C 1.53036 * 109.27663 * 62.25291 * 4 2 1 6 6 N 1.46846 * 109.52490 * 59.17848 * 5 4 2 7 7 C 1.46851 * 111.19590 * 298.25510 * 6 5 4 8 8 C 1.53033 * 109.52109 * 61.74610 * 7 6 5 9 9 C 1.50694 * 109.50665 * 60.75826 * 8 7 6 10 10 H 1.08000 * 120.00563 * 240.19585 * 9 8 7 11 11 C 1.37885 * 119.99902 * 60.19749 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.50702 * 109.53393 * 180.86039 * 8 7 6 18 18 O 1.20820 * 120.00372 * 119.89727 * 17 8 7 19 19 O 1.34237 * 119.99854 * 299.89775 * 17 8 7 20 20 H 1.08999 * 109.47108 * 180.15200 * 1 2 3 21 21 H 1.08992 * 109.46986 * 300.15117 * 1 2 3 22 22 H 1.08999 * 109.47265 * 60.15552 * 1 2 3 23 23 H 1.08998 * 109.49900 * 182.18876 * 4 2 1 24 24 H 1.08994 * 109.50228 * 302.30958 * 4 2 1 25 25 H 1.08999 * 109.45998 * 179.19354 * 5 4 2 26 26 H 1.09002 * 109.46714 * 299.17131 * 5 4 2 27 27 H 1.00900 * 111.00333 * 174.16147 * 6 5 4 28 28 H 1.08993 * 109.46272 * 301.72486 * 7 6 5 29 29 H 1.09008 * 109.45811 * 181.75908 * 7 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 31 31 H 0.96700 * 116.99912 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2478 5 6 1.5767 -2.1827 1.2115 6 7 2.0925 -2.8324 -0.0002 7 6 1.5766 -2.1825 -1.2118 8 6 2.0418 -0.7250 -1.2478 9 6 3.5477 -0.6779 -1.2749 10 1 4.0869 -0.1809 -0.4820 11 6 4.2374 -1.2693 -2.3122 12 7 3.5809 -1.8750 -3.2775 13 14 6.1041 -1.2103 -2.3461 14 1 6.5997 -1.9142 -3.5562 15 1 6.5542 0.2044 -2.3767 16 1 6.6425 -1.8750 -1.1322 17 6 1.4950 -0.0519 -2.4804 18 8 0.7716 0.9098 -2.3730 19 8 1.8118 -0.5209 -3.6976 20 1 -0.3633 -1.0276 0.0027 21 1 -0.3633 0.5161 0.8886 22 1 -0.3634 0.5114 -0.8914 23 1 3.1310 -0.6911 1.2674 24 1 1.6457 -0.2389 2.1393 25 1 1.9514 -2.7054 2.0915 26 1 0.4872 -2.2163 1.2056 27 1 1.8795 -3.8186 -0.0003 28 1 0.4872 -2.2161 -1.2061 29 1 1.9514 -2.7052 -2.0919 30 1 4.0661 -2.2907 -4.0073 31 1 1.4368 -0.0564 -4.4583 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575456068.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -98.037056 kcal Electronic energy + Delta-G solvation = -15727.981977 eV Core-core repulsion = 13201.866089 eV Total energy + Delta-G solvation = -2526.115888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.34989 -39.06905 -36.50961 -34.74506 -33.64742 -31.47735 -28.90472 -26.06484 -24.74044 -23.82640 -22.03523 -19.45975 -18.57475 -17.98733 -17.49454 -16.63702 -15.97136 -15.59099 -15.53265 -15.01005 -14.47624 -14.26356 -13.89058 -13.40393 -12.88362 -12.81094 -12.56253 -12.40842 -12.39266 -11.97015 -11.77451 -11.72460 -11.50604 -11.04122 -10.78039 -10.68259 -10.14056 -8.86606 -7.88945 -6.06364 1.50227 1.51324 1.56633 1.86555 2.53552 2.95283 3.36381 3.72656 4.11688 4.17513 4.39700 4.60853 4.68124 4.77724 4.81323 4.90218 4.97690 5.12634 5.24041 5.30259 5.41292 5.45419 5.61619 5.80861 5.98815 6.17437 6.26724 6.56719 6.81872 6.92153 7.56118 7.71939 9.05136 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.016668 C = 0.013112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.613615 B = 1679.493531 C = 2134.953639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 H 0.040 0.960 4 C -0.098 4.098 5 C 0.063 3.937 6 N -0.677 5.677 7 C 0.088 3.912 8 C 0.081 3.919 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.033 3.967 12 N -0.845 5.845 13 Si 0.944 3.056 14 H -0.285 1.285 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.483 3.517 18 O -0.592 6.592 19 O -0.451 6.451 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.338 0.662 28 H -0.007 1.007 29 H 0.085 0.915 30 H 0.259 0.741 31 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -1.834 4.565 5.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.058 0.942 4 C -0.136 4.136 5 C -0.066 4.066 6 N -0.307 5.307 7 C -0.042 4.042 8 C 0.079 3.921 9 C -0.543 4.543 10 H 0.070 0.930 11 C -0.171 4.171 12 N -0.482 5.482 13 Si 0.771 3.229 14 H -0.211 1.211 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.330 3.670 18 O -0.488 6.488 19 O -0.255 6.255 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.046 0.954 27 H 0.156 0.844 28 H 0.011 0.989 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.757 -1.583 4.741 5.708 hybrid contribution -0.107 0.263 -0.924 0.966 sum -2.864 -1.320 3.817 4.951 Atomic orbital electron populations 1.22131 0.95567 1.01069 1.02320 1.20943 0.95153 0.97728 0.95057 0.94154 1.21496 1.00993 0.95140 0.95975 1.21924 0.96397 0.95155 0.93114 1.59960 1.63637 1.05766 1.01381 1.21705 0.92221 0.96248 0.93980 1.18116 0.96069 0.92361 0.85525 1.20705 0.89035 1.36223 1.08317 0.93024 1.25445 1.01117 0.95160 0.95337 1.69865 1.35149 1.33234 1.09943 0.85853 0.82344 0.77441 0.77230 1.21087 1.21117 1.20100 1.25440 0.73533 0.81401 0.86668 1.90408 1.39216 1.30934 1.88257 1.85575 1.67979 1.56874 1.15051 0.93266 0.91931 0.92436 0.92394 0.90548 0.89740 0.95403 0.84375 0.98944 0.89658 0.93060 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.26 71.98 0.59 -5.30 16 2 C -0.07 -2.97 1.88 -10.71 -0.02 -2.99 16 3 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.10 -3.57 5.34 30.65 0.16 -3.41 16 5 C 0.06 2.10 6.30 86.33 0.54 2.64 16 6 N -0.68 -26.33 6.45 -514.01 -3.32 -29.65 16 7 C 0.09 3.94 4.75 86.32 0.41 4.35 16 8 C 0.08 3.88 0.27 -53.62 -0.01 3.87 16 9 C -0.51 -26.33 6.93 25.60 0.18 -26.16 16 10 H 0.05 2.75 6.86 -2.91 -0.02 2.73 16 11 C 0.03 1.72 5.08 84.66 0.43 2.15 16 12 N -0.85 -43.83 8.04 21.45 0.17 -43.66 16 13 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 14 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.48 24.07 6.60 71.24 0.47 24.54 16 18 O -0.59 -30.24 14.28 21.98 0.31 -29.92 16 19 O -0.45 -21.39 9.77 -51.49 -0.50 -21.89 16 20 H 0.05 1.79 4.92 -2.39 -0.01 1.78 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 2.47 5.34 -2.39 -0.01 2.46 16 23 H 0.06 2.33 6.82 -2.39 -0.02 2.31 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.03 0.87 6.51 -2.39 -0.02 0.86 16 27 H 0.34 11.38 8.90 -89.69 -0.80 10.59 16 28 H -0.01 -0.32 6.51 -2.39 -0.02 -0.33 16 29 H 0.09 4.27 6.06 -2.38 -0.01 4.25 16 30 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.37 13.97 9.10 -74.06 -0.67 13.30 16 Total: -1.00 -59.07 236.71 1.14 -57.92 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.31 Total: 23.07 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 2.76 Total: -0.30 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -3.14 Total: -73.31 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.19 Total: -51.82 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -59.07 1.14 -57.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575456068.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.114 kcal (2) G-P(sol) polarization free energy of solvation -59.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds