Wall clock time and date at job start Mon Mar 30 2020 03:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99604 * 2 1 4 4 C 1.50695 * 115.56637 * 326.85325 * 3 2 1 5 5 O 1.21281 * 120.00279 * 119.22638 * 4 3 2 6 6 N 1.34781 * 120.00015 * 299.23200 * 4 3 2 7 7 C 1.46498 * 119.99935 * 184.31959 * 6 4 3 8 8 H 1.09003 * 109.47199 * 324.99584 * 7 6 4 9 9 C 1.52998 * 109.47513 * 84.99988 * 7 6 4 10 10 C 1.50703 * 109.47109 * 204.99782 * 7 6 4 11 11 H 1.08000 * 119.99540 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00184 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99835 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 119.99773 * 0.02562 * 12 10 7 15 15 H 1.48495 * 109.47348 * 89.99628 * 14 12 10 16 16 H 1.48501 * 109.47065 * 209.99761 * 14 12 10 17 17 H 1.48505 * 109.47166 * 329.99133 * 14 12 10 18 18 C 1.53001 * 117.49814 * 112.54443 * 3 2 1 19 19 C 1.53000 * 60.00168 * 107.48868 * 18 3 2 20 20 H 1.09006 * 109.47414 * 176.60151 * 1 2 3 21 21 H 1.09002 * 109.46809 * 296.59906 * 1 2 3 22 22 H 1.09003 * 109.47713 * 56.59872 * 1 2 3 23 23 H 0.96998 * 119.99971 * 4.31557 * 6 4 3 24 24 H 1.09007 * 109.46706 * 300.00225 * 9 7 6 25 25 H 1.09003 * 109.47218 * 59.99607 * 9 7 6 26 26 H 1.08996 * 109.47830 * 179.97438 * 9 7 6 27 27 H 0.97003 * 119.99948 * 180.02562 * 13 12 10 28 28 H 1.09002 * 117.50117 * 214.97526 * 18 3 2 29 29 H 1.09005 * 117.49892 * 359.97438 * 18 3 2 30 30 H 1.09007 * 117.49579 * 252.51709 * 19 18 3 31 31 H 1.08996 * 117.50409 * 107.49102 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.2348 2.3625 -0.7433 5 8 0.8223 3.3389 -0.1540 6 7 0.9996 2.2227 -2.0630 7 6 0.3291 3.2932 -2.8050 8 1 -0.4129 3.7698 -2.1643 9 6 1.3621 4.3310 -3.2483 10 6 -0.3526 2.7133 -4.0175 11 1 -0.2919 1.6534 -4.2158 12 6 -1.0536 3.5358 -4.8737 13 7 -1.6479 3.0298 -5.9321 14 14 -1.1578 5.3692 -4.5311 15 1 -0.0233 6.0618 -5.1930 16 1 -2.4393 5.8998 -5.0617 17 1 -1.0940 5.6033 -3.0660 18 6 2.7728 1.7392 1.2535 19 6 3.5371 1.3990 -0.0276 20 1 -0.3634 -1.0259 -0.0609 21 1 -0.3633 0.4601 0.9189 22 1 -0.3635 0.5657 -0.8579 23 1 1.2744 1.4133 -2.5216 24 1 1.8551 4.7505 -2.3713 25 1 2.1041 3.8545 -3.8890 26 1 0.8633 5.1273 -3.8007 27 1 -2.1408 3.6085 -6.5347 28 1 2.7137 2.7891 1.5405 29 1 2.8309 1.0290 2.0783 30 1 4.0982 0.4647 -0.0457 31 1 3.9808 2.2250 -0.5834 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592755181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:49 Heat of formation + Delta-G solvation = -46.443574 kcal Electronic energy + Delta-G solvation = -14688.707520 eV Core-core repulsion = 12164.828893 eV Total energy + Delta-G solvation = -2523.878627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97180 -37.43993 -35.31419 -34.58899 -32.40925 -29.98455 -26.55159 -25.28698 -24.12196 -22.45058 -20.68100 -19.56999 -18.01377 -16.47633 -16.06288 -15.43950 -14.99412 -14.76028 -14.16962 -13.85137 -13.65594 -13.01598 -12.90032 -12.26164 -11.94819 -11.68529 -11.49133 -11.36081 -11.13705 -10.86777 -10.83341 -10.23467 -9.74223 -9.36638 -9.27410 -9.07524 -8.80289 -8.24985 -6.24421 -4.27493 2.89730 3.20209 3.32477 3.36129 3.40436 3.63119 4.04490 4.27998 4.87847 5.03270 5.10123 5.14163 5.43793 5.55138 5.60398 5.63822 5.88653 5.89856 6.13217 6.24892 6.30136 6.49111 6.77170 7.03990 7.16599 7.21018 7.44655 8.07449 8.44632 8.69191 8.80454 9.35644 10.87643 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.008985 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.536662 B = 3115.570440 C = 3391.015995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.011 3.989 4 C 0.521 3.479 5 O -0.543 6.543 6 N -0.689 5.689 7 C 0.233 3.767 8 H 0.050 0.950 9 C -0.161 4.161 10 C -0.536 4.536 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.891 5.891 14 Si 0.885 3.115 15 H -0.276 1.276 16 H -0.293 1.293 17 H -0.262 1.262 18 C -0.167 4.167 19 C -0.147 4.147 20 H 0.091 0.909 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.400 0.600 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.268 0.732 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -3.327 9.808 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C -0.032 4.032 4 C 0.305 3.695 5 O -0.422 6.422 6 N -0.337 5.337 7 C 0.130 3.870 8 H 0.068 0.932 9 C -0.219 4.219 10 C -0.574 4.574 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.527 5.527 14 Si 0.715 3.285 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.187 1.187 18 C -0.205 4.205 19 C -0.184 4.184 20 H 0.110 0.890 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.234 0.766 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.156 -2.750 10.019 12.616 hybrid contribution -0.187 0.698 -0.271 0.772 sum 6.969 -2.052 9.748 12.158 Atomic orbital electron populations 1.22965 0.79885 1.03182 1.01563 1.87849 1.20713 1.22949 1.94583 1.22019 0.93748 0.84984 1.02451 1.19715 0.80342 0.86419 0.83074 1.90670 1.51438 1.32017 1.68056 1.46276 1.58106 1.21736 1.07622 1.19183 0.90675 0.84972 0.92153 0.93230 1.22458 1.00338 0.99521 0.99629 1.21013 1.32963 0.96774 1.06631 0.90100 1.24828 0.94405 0.98808 0.94448 1.69864 1.33472 1.36072 1.13330 0.86880 0.76643 0.85480 0.79525 1.20252 1.22056 1.18701 1.23441 1.01797 1.03329 0.91937 1.23262 0.90568 1.03925 1.00682 0.89019 0.93687 0.92246 0.76625 0.94669 0.92619 0.93271 0.92225 0.87424 0.87675 0.87317 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.48 101.05 1.06 1.36 16 2 O -0.34 -5.37 10.96 -35.23 -0.39 -5.76 16 3 C 0.01 0.18 2.84 -91.77 -0.26 -0.08 16 4 C 0.52 10.20 5.56 -10.99 -0.06 10.13 16 5 O -0.54 -12.36 16.22 5.56 0.09 -12.27 16 6 N -0.69 -14.01 4.44 -54.93 -0.24 -14.25 16 7 C 0.23 5.56 2.19 -69.08 -0.15 5.41 16 8 H 0.05 1.30 6.58 -51.93 -0.34 0.96 16 9 C -0.16 -3.58 8.96 37.16 0.33 -3.25 16 10 C -0.54 -14.42 9.31 -34.44 -0.32 -14.74 16 11 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 12 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 13 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 14 Si 0.89 21.60 24.37 -169.99 -4.14 17.46 16 15 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.26 -6.36 6.53 56.52 0.37 -6.00 16 18 C -0.17 -2.24 9.99 -26.73 -0.27 -2.50 16 19 C -0.15 -1.87 10.18 -26.73 -0.27 -2.14 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.00 6.51 -51.93 -0.34 0.66 16 23 H 0.40 7.47 8.54 -40.82 -0.35 7.12 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.11 1.49 7.91 -51.93 -0.41 1.08 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -30.62 261.51 -4.17 -34.80 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.17 Total: 5.23 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.04 Total: -3.70 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.53 Total: -39.69 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.30 Total: -18.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.62 -4.17 -34.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds