Wall clock time and date at job start Mon Mar 30 2020 03:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99604 * 2 1 4 4 C 1.50695 * 115.56637 * 326.85325 * 3 2 1 5 5 O 1.21281 * 120.00279 * 119.22638 * 4 3 2 6 6 N 1.34781 * 120.00015 * 299.23200 * 4 3 2 7 7 C 1.46498 * 119.99935 * 184.31959 * 6 4 3 8 8 H 1.09003 * 109.47199 * 324.99584 * 7 6 4 9 9 C 1.52998 * 109.47513 * 84.99988 * 7 6 4 10 10 C 1.50703 * 109.47109 * 204.99782 * 7 6 4 11 11 H 1.08000 * 119.99540 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00184 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99835 * 179.97438 * 12 10 7 14 14 Si 1.86797 * 119.99773 * 0.02562 * 12 10 7 15 15 H 1.48495 * 109.47348 * 89.99628 * 14 12 10 16 16 H 1.48501 * 109.47065 * 209.99761 * 14 12 10 17 17 H 1.48505 * 109.47166 * 329.99133 * 14 12 10 18 18 C 1.53001 * 117.49814 * 112.54443 * 3 2 1 19 19 C 1.53000 * 60.00168 * 107.48868 * 18 3 2 20 20 H 1.09006 * 109.47414 * 176.60151 * 1 2 3 21 21 H 1.09002 * 109.46809 * 296.59906 * 1 2 3 22 22 H 1.09003 * 109.47713 * 56.59872 * 1 2 3 23 23 H 0.96998 * 119.99971 * 4.31557 * 6 4 3 24 24 H 1.09007 * 109.46706 * 300.00225 * 9 7 6 25 25 H 1.09003 * 109.47218 * 59.99607 * 9 7 6 26 26 H 1.08996 * 109.47830 * 179.97438 * 9 7 6 27 27 H 0.97003 * 119.99948 * 180.02562 * 13 12 10 28 28 H 1.09002 * 117.50117 * 214.97526 * 18 3 2 29 29 H 1.09005 * 117.49892 * 359.97438 * 18 3 2 30 30 H 1.09007 * 117.49579 * 252.51709 * 19 18 3 31 31 H 1.08996 * 117.50409 * 107.49102 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.2348 2.3625 -0.7433 5 8 0.8223 3.3389 -0.1540 6 7 0.9996 2.2227 -2.0630 7 6 0.3291 3.2932 -2.8050 8 1 -0.4129 3.7698 -2.1643 9 6 1.3621 4.3310 -3.2483 10 6 -0.3526 2.7133 -4.0175 11 1 -0.2919 1.6534 -4.2158 12 6 -1.0536 3.5358 -4.8737 13 7 -1.6479 3.0298 -5.9321 14 14 -1.1578 5.3692 -4.5311 15 1 -0.0233 6.0618 -5.1930 16 1 -2.4393 5.8998 -5.0617 17 1 -1.0940 5.6033 -3.0660 18 6 2.7728 1.7392 1.2535 19 6 3.5371 1.3990 -0.0276 20 1 -0.3634 -1.0259 -0.0609 21 1 -0.3633 0.4601 0.9189 22 1 -0.3635 0.5657 -0.8579 23 1 1.2744 1.4133 -2.5216 24 1 1.8551 4.7505 -2.3713 25 1 2.1041 3.8545 -3.8890 26 1 0.8633 5.1273 -3.8007 27 1 -2.1408 3.6085 -6.5347 28 1 2.7137 2.7891 1.5405 29 1 2.8309 1.0290 2.0783 30 1 4.0982 0.4647 -0.0457 31 1 3.9808 2.2250 -0.5834 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:49 Heat of formation + Delta-G solvation = -69.563287 kcal Electronic energy + Delta-G solvation = -14689.710066 eV Core-core repulsion = 12164.828893 eV Total energy + Delta-G solvation = -2524.881173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40998 -38.83547 -37.00659 -35.85656 -34.43467 -31.82181 -27.72036 -27.28158 -25.64582 -23.47441 -22.41770 -21.16705 -19.52699 -18.32976 -17.64576 -16.94886 -16.65601 -16.02263 -15.60500 -15.42175 -15.07560 -14.78949 -14.43816 -14.16433 -13.74071 -13.28147 -12.87212 -12.82531 -12.46457 -12.38179 -12.18446 -11.96982 -11.63100 -11.33408 -10.90666 -10.77638 -10.37027 -10.00423 -8.40541 -6.47365 1.25712 1.34211 1.38970 1.43306 2.11227 2.23946 2.33398 2.87522 2.95281 3.58121 3.83037 3.95424 4.37064 4.38594 4.38989 4.46537 4.51425 4.64513 4.66572 4.75076 4.90313 4.93145 5.15512 5.25825 5.36057 5.52820 5.88398 6.09347 6.52909 6.71085 7.10653 7.26178 8.74678 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.008985 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.536662 B = 3115.570440 C = 3391.015995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C -0.016 4.016 4 C 0.524 3.476 5 O -0.579 6.579 6 N -0.688 5.688 7 C 0.238 3.762 8 H 0.025 0.975 9 C -0.155 4.155 10 C -0.535 4.535 11 H 0.055 0.945 12 C 0.030 3.970 13 N -0.932 5.932 14 Si 0.939 3.061 15 H -0.257 1.257 16 H -0.291 1.291 17 H -0.263 1.263 18 C -0.156 4.156 19 C -0.124 4.124 20 H 0.120 0.880 21 H 0.046 0.954 22 H 0.031 0.969 23 H 0.407 0.593 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -3.245 10.901 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.260 6.260 3 C -0.059 4.059 4 C 0.309 3.691 5 O -0.460 6.460 6 N -0.337 5.337 7 C 0.134 3.866 8 H 0.042 0.958 9 C -0.213 4.213 10 C -0.573 4.573 11 H 0.073 0.927 12 C -0.170 4.170 13 N -0.570 5.570 14 Si 0.767 3.233 15 H -0.183 1.183 16 H -0.218 1.218 17 H -0.187 1.187 18 C -0.193 4.193 19 C -0.161 4.161 20 H 0.138 0.862 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.243 0.757 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.775 -2.689 11.119 14.418 hybrid contribution -0.699 0.581 -0.575 1.076 sum 8.076 -2.108 10.543 13.448 Atomic orbital electron populations 1.23024 0.79713 1.04560 1.00330 1.87852 1.20883 1.22588 1.94676 1.21981 0.95245 0.84152 1.04531 1.20318 0.79577 0.86782 0.82399 1.90643 1.52808 1.33922 1.68585 1.46132 1.58021 1.21305 1.08211 1.18866 0.90987 0.86114 0.90631 0.95761 1.22348 0.99935 0.98764 1.00294 1.21201 1.32881 0.95745 1.07487 0.92668 1.25563 0.94190 1.02985 0.94271 1.69973 1.34778 1.37735 1.14558 0.85996 0.77260 0.80745 0.79349 1.18288 1.21845 1.18734 1.23551 1.00091 1.03493 0.92209 1.23452 0.87999 1.05214 0.99431 0.86215 0.93547 0.95014 0.75743 0.93355 0.91378 0.93807 0.91955 0.88151 0.85448 0.84801 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.48 113.37 1.19 1.75 16 2 O -0.34 -10.03 10.96 -148.98 -1.63 -11.66 16 3 C -0.02 -0.47 2.84 -11.54 -0.03 -0.51 16 4 C 0.52 20.09 5.56 87.65 0.49 20.58 16 5 O -0.58 -26.17 16.22 -3.03 -0.05 -26.22 16 6 N -0.69 -27.78 4.44 -446.09 -1.98 -29.76 16 7 C 0.24 11.34 2.19 44.25 0.10 11.43 16 8 H 0.02 1.29 6.58 -2.39 -0.02 1.28 16 9 C -0.16 -6.65 8.96 71.98 0.65 -6.00 16 10 C -0.54 -29.18 9.31 25.60 0.24 -28.94 16 11 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 12 C 0.03 1.68 5.45 84.66 0.46 2.14 16 13 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 14 Si 0.94 44.28 24.37 68.60 1.67 45.95 16 15 H -0.26 -11.32 6.87 99.48 0.68 -10.64 16 16 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 17 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 18 C -0.16 -3.71 9.99 30.59 0.31 -3.41 16 19 C -0.12 -2.73 10.18 30.60 0.31 -2.42 16 20 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.03 1.06 6.51 -2.39 -0.02 1.05 16 23 H 0.41 15.14 8.54 -92.71 -0.79 14.35 16 24 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.10 2.56 7.91 -2.39 -0.02 2.55 16 29 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -65.50 261.51 2.27 -63.23 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.26 Total: 19.13 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.70 Total: -5.37 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.68 Total: -85.07 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.68 Total: -37.88 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.67 Total: 45.95 kcal Total: -65.50 2.27 -63.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.335 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds