Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47415 * 2 1 4 4 C 1.50695 * 109.47165 * 239.99661 * 2 1 3 5 5 H 1.08005 * 120.00506 * 245.42132 * 4 2 1 6 6 C 1.37878 * 120.00012 * 65.15251 * 4 2 1 7 7 N 1.31516 * 119.99966 * 355.39971 * 6 4 2 8 8 Si 1.86796 * 120.00293 * 175.40328 * 6 4 2 9 9 H 1.48500 * 109.47419 * 94.99535 * 8 6 4 10 10 H 1.48498 * 109.47384 * 214.99683 * 8 6 4 11 11 H 1.48505 * 109.47148 * 334.99340 * 8 6 4 12 12 C 1.50704 * 109.47149 * 119.99680 * 2 1 3 13 13 O 1.21287 * 120.00037 * 119.99776 * 12 2 1 14 14 N 1.34770 * 120.00298 * 300.00397 * 12 2 1 15 15 C 1.47072 * 136.05583 * 359.62769 * 14 12 2 16 16 C 1.53240 * 88.08123 * 207.20566 * 15 14 12 17 17 C 1.53006 * 114.32369 * 220.47061 * 16 15 14 18 18 O 1.42893 * 114.02129 * 87.71492 * 16 15 14 19 19 C 1.47067 * 136.05969 * 179.97438 * 14 12 2 20 20 H 1.08994 * 109.47143 * 294.98205 * 1 2 3 21 21 H 1.09002 * 109.46989 * 54.98384 * 1 2 3 22 22 H 1.09004 * 109.46898 * 174.98487 * 1 2 3 23 23 H 0.96996 * 120.00568 * 180.02562 * 7 6 4 24 24 H 1.09003 * 113.46597 * 321.93275 * 15 14 12 25 25 H 1.08994 * 113.46928 * 92.37168 * 15 14 12 26 26 H 1.08997 * 109.47169 * 153.75996 * 17 16 15 27 27 H 1.09003 * 109.46581 * 273.75729 * 17 16 15 28 28 H 1.09002 * 109.47132 * 33.75605 * 17 16 15 29 29 H 0.96702 * 114.00299 * 86.38222 * 18 16 15 30 30 H 1.08998 * 113.47141 * 267.62215 * 19 14 12 31 31 H 1.08999 * 113.46947 * 38.06465 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5791 -1.6368 -1.1337 6 6 1.7890 -0.1808 -2.4799 7 7 1.0423 0.8946 -2.6042 8 14 2.5201 -0.9906 -3.9962 9 1 1.5264 -1.9225 -4.5874 10 1 2.8744 0.0523 -4.9922 11 1 3.7406 -1.7455 -3.6144 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2500 2.4546 15 6 0.9211 0.8725 2.9893 16 6 1.8033 0.8262 4.2415 17 6 1.0451 1.0313 5.5545 18 8 2.9930 1.6117 4.1441 19 6 1.9857 -0.6452 3.8434 20 1 -0.3633 0.4340 0.9315 21 1 -0.3633 0.5897 -0.8417 22 1 -0.3633 -1.0238 -0.0898 23 1 0.8708 1.2671 -3.4833 24 1 1.0324 1.7925 2.4155 25 1 -0.1213 0.6194 3.1830 26 1 1.5863 0.5454 6.3663 27 1 0.9598 2.0980 5.7620 28 1 0.0490 0.5967 5.4706 29 1 2.8745 2.5379 4.3955 30 1 1.2296 -1.3063 4.2668 31 1 3.0005 -1.0132 3.9945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597412591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -77.957598 kcal Electronic energy + Delta-G solvation = -14601.701408 eV Core-core repulsion = 12076.456231 eV Total energy + Delta-G solvation = -2525.245177 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.59127 -39.33002 -36.22505 -35.78740 -32.85957 -31.40125 -27.84144 -27.33155 -26.94191 -24.06152 -21.51715 -20.06436 -18.46300 -17.69670 -17.57462 -17.00276 -16.50759 -15.93742 -15.64596 -14.99997 -14.69112 -14.26212 -14.06415 -13.47477 -13.17608 -12.96437 -12.87867 -12.74500 -12.67392 -12.58593 -12.29467 -12.03935 -11.72475 -11.11657 -10.93345 -10.62321 -10.30201 -9.63410 -8.20817 -6.30704 1.37504 1.38194 1.51684 1.83551 2.01176 2.42466 2.95731 3.09339 3.32631 3.86794 4.03276 4.23058 4.45083 4.56404 4.58590 4.68556 4.79884 4.88451 4.93005 4.99054 5.00110 5.14607 5.34166 5.44149 5.68622 5.87570 6.16485 6.72079 6.84963 6.90494 7.34929 7.42956 8.86746 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056073 B = 0.007693 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.229627 B = 3638.591235 C = 3791.712229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.035 3.965 3 H 0.033 0.967 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.270 1.270 11 H -0.281 1.281 12 C 0.543 3.457 13 O -0.597 6.597 14 N -0.657 5.657 15 C 0.072 3.928 16 C 0.107 3.893 17 C -0.152 4.152 18 O -0.560 6.560 19 C 0.095 3.905 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.022 0.978 23 H 0.267 0.733 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.400 0.600 30 H 0.122 0.878 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 4.812 15.881 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.014 3.986 3 H 0.051 0.949 4 C -0.574 4.574 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.336 3.664 13 O -0.478 6.478 14 N -0.393 5.393 15 C -0.050 4.050 16 C 0.065 3.935 17 C -0.209 4.209 18 O -0.369 6.369 19 C -0.027 4.027 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.137 0.863 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.251 0.749 30 H 0.140 0.860 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.803 3.784 15.264 16.180 hybrid contribution 0.389 -0.010 -0.999 1.073 sum -3.414 3.774 14.265 15.145 Atomic orbital electron populations 1.21518 0.94686 0.99697 1.00975 1.18695 0.95549 0.95371 0.88973 0.94880 1.21280 1.35881 1.08868 0.91412 0.93662 1.25641 0.95127 0.95715 1.01429 1.69974 1.37728 1.22626 1.24630 0.85530 0.78723 0.78473 0.78863 1.19508 1.19510 1.20624 1.21336 0.78122 0.83091 0.83872 1.90491 1.41134 1.29422 1.86744 1.49692 1.52835 1.32408 1.04332 1.24032 0.97570 0.89946 0.93448 1.22378 0.85588 0.90814 0.94744 1.22135 1.00762 1.04595 0.93430 1.86542 1.32863 1.26566 1.90960 1.23399 1.02302 0.97010 0.79970 0.92861 0.91479 0.95857 0.92402 0.90586 0.86266 0.90524 0.89364 0.89136 0.74860 0.86003 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.89 71.98 0.64 -4.66 16 2 C 0.04 1.92 2.46 -12.29 -0.03 1.89 16 3 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.54 -33.09 8.30 25.60 0.21 -32.88 16 5 H 0.05 2.99 6.78 -2.91 -0.02 2.98 16 6 C 0.02 1.18 5.36 84.65 0.45 1.64 16 7 N -0.91 -52.81 11.58 21.45 0.25 -52.56 16 8 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 12 C 0.54 28.25 7.40 87.66 0.65 28.90 16 13 O -0.60 -35.96 16.24 -3.05 -0.05 -36.00 16 14 N -0.66 -25.59 3.63 -859.14 -3.12 -28.71 16 15 C 0.07 1.91 6.12 83.09 0.51 2.42 16 16 C 0.11 2.30 2.03 -10.54 -0.02 2.28 16 17 C -0.15 -1.65 9.54 71.98 0.69 -0.96 16 18 O -0.56 -13.84 13.55 -148.98 -2.02 -15.86 16 19 C 0.10 2.79 8.05 83.19 0.67 3.46 16 20 H 0.05 2.05 6.19 -2.39 -0.01 2.04 16 21 H 0.07 3.46 6.44 -2.39 -0.02 3.44 16 22 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.12 2.38 7.83 -2.39 -0.02 2.36 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.75 7.90 -2.39 -0.02 0.73 16 29 H 0.40 5.51 9.04 -74.06 -0.67 4.84 16 30 H 0.12 2.74 8.10 -2.39 -0.02 2.72 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -79.44 263.45 1.31 -78.13 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 0.46 Total: 4.40 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 3.77 Total: 2.09 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.87 Total: -81.28 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -2.07 Total: -51.87 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -79.44 1.31 -78.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597412591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.171 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds