Wall clock time and date at job start Mon Mar 30 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00222 * 2 1 4 4 H 1.09005 * 109.47175 * 29.99736 * 3 2 1 5 5 C 1.53002 * 109.47125 * 269.99865 * 3 2 1 6 6 C 1.50700 * 109.47378 * 149.99867 * 3 2 1 7 7 O 1.21286 * 119.99450 * 4.99729 * 6 3 2 8 8 N 1.34772 * 120.00116 * 185.00243 * 6 3 2 9 9 C 1.47066 * 136.05397 * 179.97438 * 8 6 3 10 10 C 1.53503 * 87.98596 * 152.84244 * 9 8 6 11 11 C 1.50701 * 114.20491 * 139.65156 * 10 9 8 12 12 H 1.07990 * 120.00399 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99442 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00173 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99605 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47160 * 59.99885 * 15 13 11 17 17 H 1.48505 * 109.46723 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47020 * 299.99125 * 15 13 11 19 19 C 1.47060 * 136.06000 * 359.94777 * 8 6 3 20 20 H 1.08998 * 109.47054 * 300.00476 * 1 2 3 21 21 H 1.09000 * 109.46636 * 60.00081 * 1 2 3 22 22 H 1.08995 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47062 * 59.99889 * 5 3 2 24 24 H 1.09007 * 109.47085 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.46870 * 299.99928 * 5 3 2 26 26 H 1.09000 * 113.46827 * 267.61848 * 9 8 6 27 27 H 1.09003 * 113.47151 * 38.06638 * 9 8 6 28 28 H 1.08995 * 114.20536 * 272.48261 * 10 9 8 29 29 H 0.97003 * 119.99434 * 180.02562 * 14 13 11 30 30 H 1.09007 * 113.46761 * 321.93701 * 19 8 6 31 31 H 1.09003 * 113.46830 * 92.37669 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7896 0.2044 1.0915 8 7 4.0255 2.4039 0.9224 9 6 5.3034 2.7687 1.5523 10 6 5.3544 3.9856 0.6180 11 6 5.8503 5.2482 1.2744 12 1 6.1326 5.2400 2.3167 13 6 5.9435 6.4140 0.5441 14 7 5.6001 6.4239 -0.7254 15 14 6.5587 7.9790 1.3576 16 1 7.9369 7.7633 1.8666 17 1 6.5654 9.0832 0.3646 18 1 5.6634 8.3344 2.4877 19 6 3.8271 3.8305 0.6254 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.2570 1.8014 -1.9564 24 1 2.6616 2.7669 -1.4425 25 1 2.8830 1.0773 -1.9563 26 1 5.2083 3.0337 2.6053 27 1 6.0994 2.0470 1.3688 28 1 5.8192 3.7882 -0.3480 29 1 5.6661 7.2440 -1.2392 30 1 3.3675 4.0117 -0.3463 31 1 3.3391 4.3780 1.4317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598035881.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:35 Heat of formation + Delta-G solvation = -46.829441 kcal Electronic energy + Delta-G solvation = -14372.015611 eV Core-core repulsion = 11848.120251 eV Total energy + Delta-G solvation = -2523.895359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.71560 -37.99913 -36.54153 -32.76152 -31.63859 -28.86883 -26.75700 -25.38994 -24.98389 -23.24717 -20.39387 -18.29759 -17.10477 -16.60168 -16.25848 -15.48285 -15.01779 -14.70090 -14.34086 -13.66608 -13.51340 -12.63503 -12.44940 -12.26319 -12.08328 -11.71040 -11.50621 -11.27233 -11.07071 -10.94164 -10.78190 -10.35781 -9.84944 -9.50732 -9.21445 -8.89133 -8.60340 -7.88147 -6.21387 -4.27035 3.13749 3.17585 3.23611 3.29157 3.32287 4.16814 4.31703 4.87441 5.06740 5.10872 5.16917 5.30824 5.38644 5.60605 5.75234 5.79287 6.02438 6.14505 6.20778 6.26764 6.43781 6.53002 6.61955 6.78882 7.17775 7.52204 7.76505 8.14888 8.48975 8.75998 8.77309 9.39950 10.88345 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056940 B = 0.006867 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.630150 B = 4076.737863 C = 4328.070594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.077 3.923 4 H 0.081 0.919 5 C -0.171 4.171 6 C 0.533 3.467 7 O -0.547 6.547 8 N -0.643 5.643 9 C 0.102 3.898 10 C 0.036 3.964 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.093 3.907 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 -4.112 -0.263 9.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C 0.016 3.984 4 H 0.099 0.901 5 C -0.229 4.229 6 C 0.321 3.679 7 O -0.425 6.425 8 N -0.379 5.379 9 C -0.020 4.020 10 C 0.016 3.984 11 C -0.556 4.556 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.029 4.029 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.180 -4.928 -0.270 9.554 hybrid contribution -0.118 1.177 0.355 1.235 sum -8.298 -3.751 0.085 9.107 Atomic orbital electron populations 1.22834 0.81211 1.02778 0.99893 1.88025 1.19175 1.25904 1.94979 1.21850 0.93719 0.85850 0.97000 0.90108 1.22266 1.02796 1.03098 0.94736 1.19803 0.85263 0.82872 0.79926 1.90649 1.69550 1.29485 1.52807 1.49940 1.23535 1.06971 1.57424 1.23351 0.83367 0.96782 0.98491 1.20349 0.90439 0.91751 0.95822 1.20874 1.44846 0.92979 0.96917 0.91840 1.25024 0.94522 0.99210 0.94711 1.69939 1.46959 1.28193 1.07214 0.86586 0.79605 0.82306 0.79124 1.20018 1.21216 1.20074 1.23737 1.03215 0.76403 0.99521 0.94058 0.93992 0.89463 0.91787 0.89907 0.91340 0.90830 0.92369 0.91253 0.92549 0.91900 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.36 -6.10 9.89 -55.09 -0.54 -6.64 16 3 C 0.08 1.28 2.97 -27.88 -0.08 1.19 16 4 H 0.08 1.17 7.79 -51.93 -0.40 0.77 16 5 C -0.17 -2.52 9.45 37.16 0.35 -2.17 16 6 C 0.53 11.10 7.43 -10.99 -0.08 11.02 16 7 O -0.55 -13.34 17.28 -14.31 -0.25 -13.59 16 8 N -0.64 -13.26 3.66 -185.21 -0.68 -13.93 16 9 C 0.10 2.14 8.18 -8.51 -0.07 2.07 16 10 C 0.04 0.82 3.79 -91.24 -0.35 0.48 16 11 C -0.52 -12.96 8.82 -34.44 -0.30 -13.26 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -23.63 13.26 55.43 0.74 -22.90 16 15 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.09 1.91 7.67 -8.50 -0.07 1.85 16 20 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 21 H 0.04 0.41 7.87 -51.93 -0.41 0.00 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 24 H 0.08 1.27 5.72 -51.93 -0.30 0.97 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.75 8.11 -51.93 -0.42 1.32 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 30 H 0.06 1.24 6.08 -51.93 -0.32 0.93 16 31 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -29.63 267.81 -5.65 -35.28 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.33 Total: -1.23 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.40 Total: 4.27 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.06 Total: -36.83 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.79 Total: -20.23 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.63 -5.65 -35.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035881.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.546 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds