Wall clock time and date at job start Mon Mar 30 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47019 * 2 1 4 4 C 1.50705 * 109.47125 * 119.99975 * 2 1 3 5 5 H 1.07994 * 120.00087 * 119.99946 * 4 2 1 6 6 C 1.37879 * 119.99782 * 300.00275 * 4 2 1 7 7 N 1.31518 * 120.00318 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47356 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47193 * 119.99836 * 8 6 4 11 11 H 1.48500 * 109.47267 * 239.99687 * 8 6 4 12 12 C 1.50703 * 109.47468 * 239.99788 * 2 1 3 13 13 O 1.21277 * 119.99948 * 240.00044 * 12 2 1 14 14 N 1.34779 * 119.99369 * 60.00248 * 12 2 1 15 15 C 1.46496 * 119.99390 * 180.02562 * 14 12 2 16 16 H 1.09000 * 112.91246 * 23.74616 * 15 14 12 17 17 C 1.53786 * 113.61518 * 154.99856 * 15 14 12 18 18 C 1.53781 * 87.17350 * 89.15486 * 17 15 14 19 19 H 1.08997 * 113.61223 * 270.84552 * 18 17 15 20 20 O 1.42900 * 113.61371 * 140.02193 * 18 17 15 21 21 C 1.53782 * 87.08260 * 25.39213 * 18 17 15 22 22 H 1.09000 * 109.47088 * 300.00206 * 1 2 3 23 23 H 1.09005 * 109.46716 * 60.00101 * 1 2 3 24 24 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00316 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00492 * 359.97438 * 14 12 2 27 27 H 1.09002 * 113.61357 * 334.56403 * 17 15 14 28 28 H 1.09002 * 113.61608 * 203.74565 * 17 15 14 29 29 H 0.96705 * 114.00018 * 179.97438 * 20 18 17 30 30 H 1.08997 * 113.61668 * 89.11298 * 21 18 17 31 31 H 1.08998 * 113.61674 * 219.93807 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6035 8 14 2.3212 -1.1203 4.0079 9 1 3.1453 -2.2877 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1659 -1.5866 4.8161 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1948 -0.9408 -3.6506 16 1 2.4389 -1.9871 -3.4664 17 6 1.3118 -0.7235 -4.8909 18 6 2.1724 0.5147 -5.1925 19 1 1.8032 1.4274 -4.7248 20 8 2.4673 0.6825 -6.5806 21 6 3.2977 -0.1716 -4.4004 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7087 1.1614 3.4844 26 1 1.1488 0.5386 -2.5436 27 1 0.2748 -0.4870 -4.6526 28 1 1.4053 -1.5125 -5.6371 29 1 3.0080 1.4600 -6.7767 30 1 3.9352 -0.8103 -5.0117 31 1 3.8648 0.5107 -3.7671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598530138.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:40 Heat of formation + Delta-G solvation = -75.226955 kcal Electronic energy + Delta-G solvation = -14286.321487 eV Core-core repulsion = 11761.194719 eV Total energy + Delta-G solvation = -2525.126768 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84114 -38.00151 -35.24330 -33.73220 -32.14231 -30.15342 -25.73182 -25.14329 -24.42369 -22.45696 -19.73271 -19.23102 -17.62170 -16.28478 -16.02001 -15.35490 -15.11405 -14.49344 -14.14701 -13.83174 -13.01629 -12.72328 -12.36071 -12.24093 -11.73947 -11.52192 -11.29107 -11.02319 -10.71798 -10.67120 -10.45232 -10.24419 -9.96639 -9.78573 -8.96766 -8.63913 -8.46130 -8.33463 -6.03616 -4.06609 3.32372 3.39898 3.48240 3.67168 3.80789 4.15649 4.47508 4.55905 4.67330 4.94408 4.98483 5.29945 5.65133 5.72975 5.80988 5.98347 6.02092 6.05178 6.37387 6.61026 6.81958 6.91756 7.10570 7.46783 7.53253 7.75173 7.98653 8.14021 8.43877 9.03113 9.22638 9.59180 11.04115 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066461 B = 0.006520 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.200061 B = 4293.230593 C = 4469.411635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.544 6.544 14 N -0.731 5.731 15 C 0.125 3.875 16 H 0.104 0.896 17 C -0.137 4.137 18 C 0.075 3.925 19 H 0.081 0.919 20 O -0.563 6.563 21 C -0.183 4.183 22 H 0.093 0.907 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.396 0.604 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.376 0.624 30 H 0.092 0.908 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 2.156 -13.043 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.312 3.688 13 O -0.419 6.419 14 N -0.384 5.384 15 C 0.018 3.982 16 H 0.122 0.878 17 C -0.175 4.175 18 C 0.016 3.984 19 H 0.099 0.901 20 O -0.368 6.368 21 C -0.222 4.222 22 H 0.112 0.888 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.230 0.770 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.223 0.777 30 H 0.110 0.890 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.200 0.976 -12.826 12.865 hybrid contribution 0.345 0.589 0.801 1.053 sum 0.545 1.565 -12.025 12.139 Atomic orbital electron populations 1.21745 0.96500 0.99868 1.00927 1.18892 0.94187 0.96838 0.89341 0.92993 1.21194 1.30859 1.12786 0.88979 0.90714 1.24958 0.95130 0.95078 0.99152 1.69878 1.37228 1.23148 1.23441 0.86395 0.78619 0.79788 0.82444 1.19554 1.21056 1.21045 1.22029 0.78243 0.84180 0.84391 1.90529 1.37825 1.26869 1.86663 1.46058 1.55013 1.32264 1.05059 1.21489 0.93985 0.98223 0.84495 0.87826 1.23451 0.98996 0.97677 0.97371 1.23470 0.96505 0.97311 0.81093 0.90104 1.86503 1.74597 1.50934 1.24791 1.24177 0.97956 1.00759 0.99315 0.88822 0.96933 0.94948 0.93023 0.77038 0.90370 0.88429 0.77734 0.88968 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.85 7.15 -10.98 -0.08 11.77 16 13 O -0.54 -14.23 15.06 5.56 0.08 -14.15 16 14 N -0.73 -12.54 5.16 -52.92 -0.27 -12.81 16 15 C 0.12 1.87 4.33 -67.02 -0.29 1.58 16 16 H 0.10 1.74 7.47 -51.93 -0.39 1.36 16 17 C -0.14 -1.64 7.65 -25.92 -0.20 -1.84 16 18 C 0.08 0.85 5.09 -25.92 -0.13 0.71 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 20 O -0.56 -6.12 13.67 -35.23 -0.48 -6.61 16 21 C -0.18 -2.35 7.72 -25.82 -0.20 -2.55 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 23 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.40 5.83 8.12 -40.82 -0.33 5.50 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.38 2.47 9.12 45.56 0.42 2.89 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -31.97 263.59 -5.75 -37.72 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.46 Total: 5.16 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.20 Total: -5.56 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.35 Total: -37.34 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.40 Total: -20.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.97 -5.75 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598530138.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.509 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds