Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47223 * 2 1 4 4 C 1.50706 * 109.47088 * 240.00045 * 2 1 3 5 5 H 1.08005 * 119.99482 * 335.19341 * 4 2 1 6 6 C 1.37869 * 120.00131 * 155.18695 * 4 2 1 7 7 N 1.31522 * 119.99965 * 355.37558 * 6 4 2 8 8 Si 1.86802 * 120.00077 * 175.37329 * 6 4 2 9 9 H 1.48495 * 109.47280 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47116 * 120.00010 * 8 6 4 11 11 H 1.48497 * 109.46958 * 240.00081 * 8 6 4 12 12 C 1.50695 * 109.47287 * 120.00097 * 2 1 3 13 13 O 1.21287 * 120.00209 * 119.99563 * 12 2 1 14 14 N 1.34778 * 120.00201 * 300.00127 * 12 2 1 15 15 C 1.46497 * 120.00355 * 180.02562 * 14 12 2 16 16 C 1.52999 * 113.00175 * 48.17018 * 15 14 12 17 17 C 1.54035 * 113.81712 * 276.18713 * 15 14 12 18 18 O 1.44174 * 85.51857 * 223.19661 * 17 15 14 19 19 C 1.44175 * 93.34169 * 24.18923 * 18 17 15 20 20 H 1.08998 * 109.47022 * 55.19870 * 1 2 3 21 21 H 1.09002 * 109.47096 * 175.20194 * 1 2 3 22 22 H 1.09002 * 109.46668 * 295.20103 * 1 2 3 23 23 H 0.96997 * 120.00042 * 5.41660 * 7 6 4 24 24 H 0.97000 * 119.99347 * 359.97438 * 14 12 2 25 25 H 1.08999 * 109.47010 * 69.66328 * 16 15 14 26 26 H 1.08998 * 109.47656 * 189.66763 * 16 15 14 27 27 H 1.09001 * 109.46861 * 309.67095 * 16 15 14 28 28 H 1.09000 * 113.86367 * 337.34270 * 17 15 14 29 29 H 1.08996 * 113.86759 * 109.04182 * 17 15 14 30 30 H 1.09000 * 113.86663 * 221.66137 * 19 18 17 31 31 H 1.09004 * 113.98399 * 89.97131 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.4118 -1.4463 -1.7203 6 6 3.2839 -0.4208 -1.7311 7 7 4.0026 0.5387 -1.1902 8 14 3.9590 -1.3914 -3.1774 9 1 2.9626 -2.4085 -3.5992 10 1 4.2338 -0.4684 -4.3078 11 1 5.2173 -2.0692 -2.7746 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 6 3.6947 -1.2417 3.5964 17 6 1.3313 -2.1439 4.0711 18 8 1.4884 -1.6434 5.4141 19 6 1.7387 -0.2941 4.9722 20 1 -0.3633 0.5865 -0.8438 21 1 -0.3633 -1.0241 -0.0860 22 1 -0.3633 0.4376 0.9299 23 1 3.6871 0.9896 -0.3915 24 1 1.1495 0.5389 2.5435 25 1 4.2556 -0.3106 3.6757 26 1 3.9633 -1.8993 4.4231 27 1 3.9330 -1.7300 2.6514 28 1 0.3067 -2.1015 3.7018 29 1 1.8076 -3.1095 3.9017 30 1 2.5382 0.2074 5.5175 31 1 0.8397 0.3151 4.8775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601795139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = -56.805990 kcal Electronic energy + Delta-G solvation = -14863.366642 eV Core-core repulsion = 12339.038667 eV Total energy + Delta-G solvation = -2524.327975 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.70911 -38.26459 -33.92379 -33.52341 -31.10507 -29.43236 -26.57227 -25.95034 -24.65563 -22.85856 -19.90556 -18.98915 -17.29150 -16.36460 -15.99479 -15.90435 -15.28848 -14.19699 -13.71511 -13.46393 -13.33746 -13.05355 -12.41163 -12.02223 -11.85451 -11.60382 -11.32063 -11.26925 -11.03233 -10.71920 -10.60210 -10.10614 -9.83801 -9.70964 -8.80535 -8.48103 -8.35918 -8.18763 -6.38092 -4.09126 3.45788 3.52728 3.65370 3.67967 3.75702 3.90861 4.42932 4.55726 4.97756 5.19047 5.31778 5.38522 5.60971 5.86165 5.94303 6.04364 6.07127 6.13203 6.17050 6.20629 6.36587 6.46926 6.73789 6.98617 7.10277 7.16554 7.91902 8.36602 8.44705 8.84150 9.37864 9.62670 11.00682 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046566 B = 0.008917 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.154067 B = 3139.248844 C = 3365.018868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.006 3.994 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.053 0.947 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 1.077 2.923 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.508 3.492 13 O -0.521 6.521 14 N -0.744 5.744 15 C 0.115 3.885 16 C -0.155 4.155 17 C 0.029 3.971 18 O -0.379 6.379 19 C 0.032 3.968 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.029 0.971 23 H 0.265 0.735 24 H 0.393 0.607 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 0.295 8.977 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 H 0.074 0.926 4 C -0.608 4.608 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.906 3.094 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.213 1.213 12 C 0.297 3.703 13 O -0.394 6.394 14 N -0.400 5.400 15 C 0.028 3.972 16 C -0.213 4.213 17 C -0.049 4.049 18 O -0.297 6.297 19 C -0.045 4.045 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.226 0.774 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.426 -0.680 8.084 8.806 hybrid contribution -1.554 0.572 1.169 2.027 sum -4.980 -0.107 9.253 10.509 Atomic orbital electron populations 1.21649 0.96517 1.00731 0.99244 1.19162 0.93003 0.97790 0.91642 0.92587 1.21632 1.03503 1.25570 1.10087 0.92818 1.25828 0.93597 0.95808 1.02363 1.70776 1.40977 1.21077 1.21283 0.83436 0.75818 0.75450 0.74744 1.21464 1.21473 1.21313 1.22768 0.78771 0.84854 0.83946 1.90446 1.36328 1.26409 1.86220 1.46626 1.55244 1.32700 1.05449 1.23498 0.96334 0.92200 0.85197 1.22019 0.91689 1.02327 1.05230 1.24531 0.99948 0.99570 0.80833 1.89641 1.92898 1.20989 1.26189 1.24386 1.00257 0.86775 0.93090 0.92719 0.93656 0.95240 0.92372 0.77357 0.92386 0.91981 0.87874 0.90109 0.88780 0.88755 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.11 37.16 0.34 -2.06 16 2 C 0.01 0.13 2.36 -92.92 -0.22 -0.08 16 3 H 0.06 1.39 6.68 -51.93 -0.35 1.04 16 4 C -0.57 -15.94 7.55 -34.44 -0.26 -16.20 16 5 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 6 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 7 N -0.91 -27.23 13.62 55.43 0.76 -26.48 16 8 Si 1.08 26.08 29.91 -169.99 -5.08 21.00 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.51 11.67 6.92 -10.99 -0.08 11.59 16 13 O -0.52 -13.88 13.52 5.55 0.08 -13.81 16 14 N -0.74 -13.16 5.21 -53.76 -0.28 -13.44 16 15 C 0.12 1.87 1.35 -130.74 -0.18 1.69 16 16 C -0.16 -2.69 9.01 37.16 0.33 -2.36 16 17 C 0.03 0.46 8.57 37.61 0.32 0.78 16 18 O -0.38 -5.82 12.38 -35.23 -0.44 -6.25 16 19 C 0.03 0.42 8.50 37.61 0.32 0.74 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.03 0.46 7.43 -51.93 -0.39 0.08 16 23 H 0.27 7.86 6.67 -40.82 -0.27 7.59 16 24 H 0.39 5.80 8.00 -40.82 -0.33 5.47 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.95 8.06 -51.93 -0.42 0.54 16 27 H 0.10 2.20 5.45 -51.93 -0.28 1.92 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -32.32 261.76 -4.73 -37.05 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.19 Total: 3.15 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.49 Total: -5.17 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.47 Total: -39.92 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.36 Total: -20.06 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.32 -4.73 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601795139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.757 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds