Wall clock time and date at job start Mon Mar 30 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47223 * 2 1 4 4 C 1.50706 * 109.47088 * 240.00045 * 2 1 3 5 5 H 1.08005 * 119.99482 * 335.19341 * 4 2 1 6 6 C 1.37869 * 120.00131 * 155.18695 * 4 2 1 7 7 N 1.31522 * 119.99965 * 355.37558 * 6 4 2 8 8 Si 1.86802 * 120.00077 * 175.37329 * 6 4 2 9 9 H 1.48495 * 109.47280 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47116 * 120.00010 * 8 6 4 11 11 H 1.48497 * 109.46958 * 240.00081 * 8 6 4 12 12 C 1.50695 * 109.47287 * 120.00097 * 2 1 3 13 13 O 1.21287 * 120.00209 * 119.99563 * 12 2 1 14 14 N 1.34778 * 120.00201 * 300.00127 * 12 2 1 15 15 C 1.46497 * 120.00355 * 180.02562 * 14 12 2 16 16 C 1.52999 * 113.00175 * 48.17018 * 15 14 12 17 17 C 1.54035 * 113.81712 * 276.18713 * 15 14 12 18 18 O 1.44174 * 85.51857 * 223.19661 * 17 15 14 19 19 C 1.44175 * 93.34169 * 24.18923 * 18 17 15 20 20 H 1.08998 * 109.47022 * 55.19870 * 1 2 3 21 21 H 1.09002 * 109.47096 * 175.20194 * 1 2 3 22 22 H 1.09002 * 109.46668 * 295.20103 * 1 2 3 23 23 H 0.96997 * 120.00042 * 5.41660 * 7 6 4 24 24 H 0.97000 * 119.99347 * 359.97438 * 14 12 2 25 25 H 1.08999 * 109.47010 * 69.66328 * 16 15 14 26 26 H 1.08998 * 109.47656 * 189.66763 * 16 15 14 27 27 H 1.09001 * 109.46861 * 309.67095 * 16 15 14 28 28 H 1.09000 * 113.86367 * 337.34270 * 17 15 14 29 29 H 1.08996 * 113.86759 * 109.04182 * 17 15 14 30 30 H 1.09000 * 113.86663 * 221.66137 * 19 18 17 31 31 H 1.09004 * 113.98399 * 89.97131 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.4118 -1.4463 -1.7203 6 6 3.2839 -0.4208 -1.7311 7 7 4.0026 0.5387 -1.1902 8 14 3.9590 -1.3914 -3.1774 9 1 2.9626 -2.4085 -3.5992 10 1 4.2338 -0.4684 -4.3078 11 1 5.2173 -2.0692 -2.7746 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 6 3.6947 -1.2417 3.5964 17 6 1.3313 -2.1439 4.0711 18 8 1.4884 -1.6434 5.4141 19 6 1.7387 -0.2941 4.9722 20 1 -0.3633 0.5865 -0.8438 21 1 -0.3633 -1.0241 -0.0860 22 1 -0.3633 0.4376 0.9299 23 1 3.6871 0.9896 -0.3915 24 1 1.1495 0.5389 2.5435 25 1 4.2556 -0.3106 3.6757 26 1 3.9633 -1.8993 4.4231 27 1 3.9330 -1.7300 2.6514 28 1 0.3067 -2.1015 3.7018 29 1 1.8076 -3.1095 3.9017 30 1 2.5382 0.2074 5.5175 31 1 0.8397 0.3151 4.8775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601795139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:27 Heat of formation + Delta-G solvation = -81.306967 kcal Electronic energy + Delta-G solvation = -14864.429084 eV Core-core repulsion = 12339.038667 eV Total energy + Delta-G solvation = -2525.390417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.99415 -39.96334 -35.84841 -35.16021 -32.95139 -30.93915 -27.68421 -27.25941 -26.65356 -24.65530 -21.57868 -20.44717 -19.04839 -17.96235 -17.61536 -17.06538 -16.66991 -15.98257 -15.68082 -15.19681 -14.83669 -14.57578 -13.83342 -13.69191 -13.31348 -13.14622 -12.87749 -12.77159 -12.64827 -12.56697 -12.00138 -11.96255 -11.71728 -10.89029 -10.86283 -10.49039 -10.10419 -9.90438 -8.61497 -6.31639 1.49979 1.60265 1.75473 1.98819 2.34353 2.55428 2.59411 3.18044 3.28034 3.77920 4.04840 4.25424 4.33262 4.49909 4.50881 4.64975 4.65375 4.70691 4.75207 4.85836 4.88318 5.03154 5.26512 5.28613 5.40299 5.66696 5.93855 6.17613 6.56209 6.88705 7.45780 7.65156 8.78578 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046566 B = 0.008917 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.154067 B = 3139.248844 C = 3365.018868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.005 4.005 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.042 0.958 6 C -0.022 4.022 7 N -0.933 5.933 8 Si 1.112 2.888 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.291 1.291 12 C 0.509 3.491 13 O -0.566 6.566 14 N -0.723 5.723 15 C 0.098 3.902 16 C -0.152 4.152 17 C 0.031 3.969 18 O -0.389 6.389 19 C 0.049 3.951 20 H 0.058 0.942 21 H 0.038 0.962 22 H 0.070 0.930 23 H 0.256 0.744 24 H 0.410 0.590 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 0.825 10.196 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.027 4.027 3 H 0.063 0.937 4 C -0.619 4.619 5 H 0.060 0.940 6 C -0.220 4.220 7 N -0.570 5.570 8 Si 0.936 3.064 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.218 1.218 12 C 0.298 3.702 13 O -0.443 6.443 14 N -0.379 5.379 15 C 0.011 3.989 16 C -0.209 4.209 17 C -0.047 4.047 18 O -0.307 6.307 19 C -0.028 4.028 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.247 0.753 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.722 -0.112 9.340 10.466 hybrid contribution -1.210 0.419 0.875 1.551 sum -5.932 0.307 10.214 11.816 Atomic orbital electron populations 1.21554 0.93062 1.00889 1.01701 1.19191 0.95968 0.96508 0.91010 0.93739 1.21985 1.03288 1.25055 1.11601 0.94000 1.27025 0.94341 0.96129 1.04553 1.70883 1.41674 1.22665 1.21810 0.82989 0.75402 0.75006 0.73030 1.19941 1.19719 1.21756 1.22301 0.78333 0.84253 0.85322 1.90448 1.38280 1.28432 1.87122 1.46242 1.54365 1.32785 1.04503 1.23793 0.95659 0.93647 0.85761 1.21914 0.93065 1.02455 1.03507 1.24502 1.00219 0.98891 0.81045 1.89644 1.93023 1.22283 1.25740 1.24570 1.02036 0.86171 0.90036 0.92291 0.94245 0.91157 0.93385 0.75316 0.91955 0.90240 0.92181 0.89017 0.89658 0.86651 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 9.11 71.98 0.66 -3.57 16 2 C -0.01 -0.24 2.36 -12.28 -0.03 -0.27 16 3 H 0.04 2.22 6.68 -2.39 -0.02 2.21 16 4 C -0.58 -32.86 7.55 25.60 0.19 -32.67 16 5 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 6 C -0.02 -1.26 5.45 84.65 0.46 -0.79 16 7 N -0.93 -57.15 13.62 21.45 0.29 -56.85 16 8 Si 1.11 52.91 29.91 68.60 2.05 54.97 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 C 0.51 23.25 6.92 87.66 0.61 23.86 16 13 O -0.57 -30.76 13.52 -3.05 -0.04 -30.80 16 14 N -0.72 -24.15 5.21 -453.42 -2.36 -26.51 16 15 C 0.10 2.97 1.35 4.30 0.01 2.98 16 16 C -0.15 -5.17 9.01 71.98 0.65 -4.52 16 17 C 0.03 0.91 8.57 72.27 0.62 1.53 16 18 O -0.39 -10.68 12.38 -148.98 -1.84 -12.52 16 19 C 0.05 1.06 8.50 72.27 0.61 1.67 16 20 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.98 7.43 -2.39 -0.02 1.97 16 23 H 0.26 15.55 6.67 -92.71 -0.62 14.93 16 24 H 0.41 10.75 8.00 -92.71 -0.74 10.01 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.36 8.06 -2.39 -0.02 2.34 16 27 H 0.06 2.62 5.45 -2.39 -0.01 2.61 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 2.61 8.10 -2.39 -0.02 2.59 16 30 H 0.12 2.09 8.10 -2.39 -0.02 2.07 16 31 H 0.11 1.82 8.11 -2.38 -0.02 1.80 16 Total: -1.00 -71.18 261.76 2.41 -68.78 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.54 Total: 14.73 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.78 Total: -11.78 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.07 Total: -83.37 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.89 Total: -43.33 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.05 Total: 54.97 kcal Total: -71.18 2.41 -68.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601795139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.530 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds