Wall clock time and date at job start Mon Mar 30 2020 03:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 H 1.08998 * 115.54881 * 4.33750 * 3 2 1 5 5 C 1.53069 * 117.51642 * 218.61112 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52365 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 C 1.50697 * 117.50034 * 252.49893 * 6 5 3 9 9 O 1.21286 * 120.00074 * 68.74360 * 8 6 5 10 10 N 1.34775 * 120.00215 * 248.74477 * 8 6 5 11 11 C 1.46502 * 120.00324 * 179.97438 * 10 8 6 12 12 H 1.09001 * 109.47106 * 325.00342 * 11 10 8 13 13 C 1.53005 * 109.46810 * 85.00435 * 11 10 8 14 14 C 1.50699 * 109.47085 * 204.99879 * 11 10 8 15 15 H 1.07999 * 120.00289 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99588 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00256 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99527 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47103 * 120.00653 * 18 16 14 21 21 H 1.48509 * 109.46932 * 240.00176 * 18 16 14 22 22 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46579 * 299.99347 * 1 2 3 24 24 H 1.09001 * 109.47769 * 59.99329 * 1 2 3 25 25 H 1.09008 * 117.49334 * 145.03921 * 5 3 2 26 26 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 27 27 H 0.97007 * 119.99741 * 0.02562 * 10 8 6 28 28 H 1.09002 * 109.47050 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.46793 * 300.00066 * 13 11 10 30 30 H 1.09000 * 109.47099 * 59.99586 * 13 11 10 31 31 H 0.96996 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1337 0.0744 5 6 3.2670 1.5200 -0.8471 6 6 3.3713 1.4727 0.6786 7 1 3.8234 0.5870 1.1249 8 6 3.6351 2.7700 1.3985 9 8 2.7831 3.6327 1.4256 10 7 4.8180 2.9717 2.0123 11 6 5.0747 4.2331 2.7117 12 1 4.5886 5.0499 2.1781 13 6 4.5173 4.1500 4.1342 14 6 6.5597 4.4831 2.7680 15 1 7.2439 3.7736 2.3265 16 6 7.0449 5.6182 3.3822 17 7 6.2118 6.4824 3.9193 18 14 8.8857 5.9284 3.4513 19 1 9.6011 4.8137 2.7799 20 1 9.1987 7.2053 2.7609 21 1 9.3206 6.0126 4.8688 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 3.3888 2.4896 -1.3301 26 1 3.6502 0.6655 -1.4049 27 1 5.4996 2.2818 1.9903 28 1 4.7079 5.0887 4.6545 29 1 3.4432 3.9691 4.0935 30 1 5.0033 3.3332 4.6677 31 1 6.5531 7.2811 4.3511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689921460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:00 Heat of formation + Delta-G solvation = -60.954454 kcal Electronic energy + Delta-G solvation = -14050.504900 eV Core-core repulsion = 11525.997034 eV Total energy + Delta-G solvation = -2524.507866 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.44738 -37.79547 -35.07803 -34.30398 -32.33257 -28.99782 -26.74425 -25.26752 -23.96687 -22.01372 -20.60698 -19.33352 -17.62033 -16.59576 -15.63521 -15.33850 -15.08688 -14.89753 -14.25279 -13.92579 -13.25427 -12.69346 -12.42570 -12.12508 -11.70112 -11.45524 -11.36040 -11.08555 -10.96604 -10.76709 -10.36942 -10.29069 -10.23331 -9.32649 -9.04629 -8.92333 -8.55196 -7.90776 -6.12251 -4.21419 3.11491 3.24115 3.31535 3.34322 3.41622 4.03254 4.27055 4.43966 4.92283 5.06688 5.12558 5.20202 5.31382 5.40191 5.52842 5.61620 5.65588 5.85378 6.11690 6.83189 6.97675 7.15048 7.15523 7.46225 7.57114 7.70286 7.91884 8.15069 8.68028 8.78480 9.13331 9.46330 10.93877 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066439 B = 0.006057 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.338688 B = 4621.506279 C = 4836.507921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.045 3.955 4 H 0.124 0.876 5 C -0.158 4.158 6 C -0.188 4.188 7 H 0.124 0.876 8 C 0.531 3.469 9 O -0.559 6.559 10 N -0.702 5.702 11 C 0.263 3.737 12 H 0.048 0.952 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.390 0.610 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -10.368 -6.388 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C -0.014 4.014 4 H 0.142 0.858 5 C -0.196 4.196 6 C -0.210 4.210 7 H 0.142 0.858 8 C 0.315 3.685 9 O -0.439 6.439 10 N -0.349 5.349 11 C 0.161 3.839 12 H 0.066 0.934 13 C -0.206 4.206 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.412 -9.711 -6.235 13.202 hybrid contribution 1.221 0.003 0.185 1.235 sum -5.191 -9.708 -6.050 12.562 Atomic orbital electron populations 1.22813 0.80436 1.02635 1.00501 1.87775 1.20218 1.25872 1.94104 1.22703 0.89805 0.86341 1.02551 0.85814 1.23405 1.00727 1.03916 0.91506 1.22784 1.02672 0.99157 0.96346 0.85839 1.19433 0.83056 0.86812 0.79156 1.90638 1.45491 1.45459 1.62345 1.46460 1.14639 1.20889 1.52888 1.18778 0.95674 0.80424 0.89006 0.93379 1.22079 0.96193 1.02654 0.99640 1.21264 0.90900 1.07209 1.37758 0.91965 1.24896 0.98354 0.95635 0.94861 1.69912 1.34105 1.11259 1.36878 0.86383 0.84627 0.78240 0.77786 1.19711 1.20868 1.20869 0.89559 0.93547 0.93750 0.87536 0.87566 0.77723 0.89121 0.96660 0.95419 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.88 101.05 1.10 1.43 16 2 O -0.36 -4.95 10.96 -35.23 -0.39 -5.34 16 3 C 0.04 0.65 5.96 -26.69 -0.16 0.49 16 4 H 0.12 1.87 7.45 -51.93 -0.39 1.49 16 5 C -0.16 -2.14 10.19 -26.70 -0.27 -2.41 16 6 C -0.19 -2.98 6.13 -91.77 -0.56 -3.54 16 7 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 8 C 0.53 10.96 7.58 -10.99 -0.08 10.87 16 9 O -0.56 -13.59 15.92 5.55 0.09 -13.50 16 10 N -0.70 -15.07 5.07 -54.93 -0.28 -15.35 16 11 C 0.26 6.81 2.56 -69.08 -0.18 6.64 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 14 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.11 1.46 8.14 -51.92 -0.42 1.04 16 26 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.39 7.29 8.54 -40.82 -0.35 6.94 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 271.54 15.07 4.09 4.09 Total: -1.00 -30.91 271.54 -5.45 -36.36 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.37 Total: 5.28 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.21 Total: -2.80 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.35 Total: -39.79 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.30 Total: -18.84 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.91 -5.45 -36.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689921460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.594 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds