Wall clock time and date at job start Mon Mar 30 2020 03:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 H 1.08998 * 115.54881 * 4.33750 * 3 2 1 5 5 C 1.53069 * 117.51642 * 218.61112 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52365 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 C 1.50697 * 117.50034 * 252.49893 * 6 5 3 9 9 O 1.21286 * 120.00074 * 68.74360 * 8 6 5 10 10 N 1.34775 * 120.00215 * 248.74477 * 8 6 5 11 11 C 1.46502 * 120.00324 * 179.97438 * 10 8 6 12 12 H 1.09001 * 109.47106 * 325.00342 * 11 10 8 13 13 C 1.53005 * 109.46810 * 85.00435 * 11 10 8 14 14 C 1.50699 * 109.47085 * 204.99879 * 11 10 8 15 15 H 1.07999 * 120.00289 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99588 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00256 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99527 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47103 * 120.00653 * 18 16 14 21 21 H 1.48509 * 109.46932 * 240.00176 * 18 16 14 22 22 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46579 * 299.99347 * 1 2 3 24 24 H 1.09001 * 109.47769 * 59.99329 * 1 2 3 25 25 H 1.09008 * 117.49334 * 145.03921 * 5 3 2 26 26 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 27 27 H 0.97007 * 119.99741 * 0.02562 * 10 8 6 28 28 H 1.09002 * 109.47050 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.46793 * 300.00066 * 13 11 10 30 30 H 1.09000 * 109.47099 * 59.99586 * 13 11 10 31 31 H 0.96996 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1337 0.0744 5 6 3.2670 1.5200 -0.8471 6 6 3.3713 1.4727 0.6786 7 1 3.8234 0.5870 1.1249 8 6 3.6351 2.7700 1.3985 9 8 2.7831 3.6327 1.4256 10 7 4.8180 2.9717 2.0123 11 6 5.0747 4.2331 2.7117 12 1 4.5886 5.0499 2.1781 13 6 4.5173 4.1500 4.1342 14 6 6.5597 4.4831 2.7680 15 1 7.2439 3.7736 2.3265 16 6 7.0449 5.6182 3.3822 17 7 6.2118 6.4824 3.9193 18 14 8.8857 5.9284 3.4513 19 1 9.6011 4.8137 2.7799 20 1 9.1987 7.2053 2.7609 21 1 9.3206 6.0126 4.8688 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 3.3888 2.4896 -1.3301 26 1 3.6502 0.6655 -1.4049 27 1 5.4996 2.2818 1.9903 28 1 4.7079 5.0887 4.6545 29 1 3.4432 3.9691 4.0935 30 1 5.0033 3.3332 4.6677 31 1 6.5531 7.2811 4.3511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689921460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:59 Heat of formation + Delta-G solvation = -83.107573 kcal Electronic energy + Delta-G solvation = -14051.465532 eV Core-core repulsion = 11525.997034 eV Total energy + Delta-G solvation = -2525.468497 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96178 -39.06390 -36.82494 -35.67287 -34.30726 -30.96411 -27.60865 -27.36305 -25.47666 -23.12758 -22.41981 -21.05949 -19.12452 -18.14286 -17.29903 -16.92413 -16.52139 -16.00783 -15.87382 -15.42952 -14.90415 -14.43284 -13.87951 -13.65150 -13.32852 -13.02255 -12.89792 -12.78381 -12.38471 -12.30176 -12.27651 -12.11629 -11.59757 -11.11306 -10.83476 -10.61032 -10.20853 -9.78721 -8.18588 -6.36311 1.44783 1.45615 1.57978 1.59956 2.17425 2.42408 2.77925 2.95427 3.12430 3.72448 3.86362 4.10127 4.17550 4.45014 4.54860 4.62262 4.72403 4.81290 4.84247 4.90156 4.99862 5.07103 5.41202 5.59545 5.66645 5.88175 6.07841 6.14807 6.71455 6.93098 7.30822 7.51384 8.88179 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066439 B = 0.006057 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.338688 B = 4621.506279 C = 4836.507921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.047 3.953 4 H 0.112 0.888 5 C -0.136 4.136 6 C -0.197 4.197 7 H 0.146 0.854 8 C 0.527 3.473 9 O -0.603 6.603 10 N -0.699 5.699 11 C 0.268 3.732 12 H -0.001 1.001 13 C -0.134 4.134 14 C -0.547 4.547 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.975 3.025 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.278 1.278 22 H 0.111 0.889 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.406 0.594 28 H 0.068 0.932 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -12.167 -7.238 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C -0.012 4.012 4 H 0.130 0.870 5 C -0.174 4.174 6 C -0.218 4.218 7 H 0.164 0.836 8 C 0.315 3.685 9 O -0.485 6.485 10 N -0.347 5.347 11 C 0.165 3.835 12 H 0.017 0.983 13 C -0.193 4.193 14 C -0.585 4.585 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.799 3.201 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.204 1.204 22 H 0.129 0.871 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.153 0.847 27 H 0.241 0.759 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.434 -11.557 -7.099 14.611 hybrid contribution 0.811 0.554 0.431 1.073 sum -4.622 -11.003 -6.668 13.671 Atomic orbital electron populations 1.23070 0.78658 1.04452 1.00990 1.87756 1.22138 1.24917 1.94103 1.22619 0.89533 0.86723 1.02316 0.87001 1.23510 0.99225 1.04890 0.89745 1.22677 1.04656 0.96808 0.97663 0.83633 1.20230 0.81867 0.88056 0.78369 1.90614 1.46682 1.47525 1.63728 1.46230 1.15724 1.19866 1.52848 1.18398 0.95236 0.81056 0.88835 0.98300 1.21906 0.96021 1.01899 0.99462 1.21571 0.91286 1.07741 1.37887 0.90795 1.25823 1.03170 0.95301 0.94312 1.70057 1.36341 1.11758 1.37517 0.85256 0.78733 0.78203 0.77884 1.18336 1.20881 1.20407 0.87102 0.93887 0.92510 0.87905 0.84661 0.75859 0.91365 0.96997 0.94021 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.88 113.37 1.23 1.67 16 2 O -0.37 -9.28 10.96 -148.98 -1.63 -10.91 16 3 C 0.05 1.30 5.96 30.62 0.18 1.48 16 4 H 0.11 3.35 7.45 -2.39 -0.02 3.34 16 5 C -0.14 -3.35 10.19 30.62 0.31 -3.04 16 6 C -0.20 -5.90 6.13 -11.54 -0.07 -5.97 16 7 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 8 C 0.53 21.78 7.58 87.66 0.66 22.44 16 9 O -0.60 -30.10 15.92 -3.05 -0.05 -30.15 16 10 N -0.70 -29.91 5.07 -446.09 -2.26 -32.17 16 11 C 0.27 14.19 2.56 44.25 0.11 14.30 16 12 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 13 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 14 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 15 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 18 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 26 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.41 14.66 8.54 -92.70 -0.79 13.87 16 28 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -67.12 271.54 2.43 -64.69 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.33 Total: 20.39 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 3.77 Total: -3.19 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.02 Total: -84.91 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.68 Total: -41.06 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -67.12 2.43 -64.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689921460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.416 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds