Wall clock time and date at job start Mon Mar 30 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.47474 * 111.00027 * 199.02516 * 13 2 1 15 15 C 1.53507 * 87.93516 * 138.70122 * 14 13 2 16 16 C 1.50697 * 114.17761 * 220.33020 * 15 14 13 17 17 O 1.20825 * 120.00076 * 93.83564 * 16 15 14 18 18 O 1.34230 * 119.99779 * 273.84607 * 16 15 14 19 19 C 1.47476 * 110.99859 * 294.99879 * 13 2 1 20 20 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 23 23 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 24 24 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 25 25 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 26 26 H 1.08996 * 113.47773 * 253.47173 * 14 13 2 27 27 H 1.09004 * 113.47463 * 23.93454 * 14 13 2 28 28 H 1.09003 * 114.17100 * 87.61927 * 15 14 13 29 29 H 0.96698 * 116.99669 * 179.97438 * 18 16 15 30 30 H 1.09003 * 113.47767 * 336.05883 * 19 13 2 31 31 H 1.09002 * 113.48016 * 106.47047 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 5.5408 -1.0995 -2.4141 9 14 3.3012 -2.1078 -3.6960 10 1 2.9395 -1.1626 -4.7827 11 1 4.1599 -3.1878 -4.2448 12 1 2.0656 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 3.4230 -0.3361 1.4796 15 6 3.0497 -0.2645 2.9669 16 6 3.6877 0.8815 3.7089 17 8 3.0947 1.9270 3.8310 18 8 4.9150 0.7407 4.2340 19 6 1.6473 0.0419 2.4228 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 1.7514 -1.7715 -1.2057 24 1 1.6052 -0.2617 -2.1370 25 1 6.0252 -1.5063 -3.1496 26 1 4.1284 -1.1337 1.2468 27 1 3.7190 0.6252 1.0594 28 1 3.1262 -1.2163 3.4926 29 1 5.2830 1.5035 4.7006 30 1 1.4694 1.1041 2.2545 31 1 0.8471 -0.4348 2.9890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695695816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:49 Heat of formation + Delta-G solvation = -57.503884 kcal Electronic energy + Delta-G solvation = -14574.612392 eV Core-core repulsion = 12050.254154 eV Total energy + Delta-G solvation = -2524.358238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.77041 -38.97456 -35.97445 -34.07953 -32.15058 -28.41390 -27.80370 -25.24026 -23.48217 -22.16785 -19.65386 -19.42179 -17.97363 -16.76120 -16.55992 -15.69074 -15.24906 -14.43815 -13.96905 -13.74009 -13.11232 -12.75936 -12.40725 -12.17755 -11.74470 -11.72486 -11.52278 -11.37815 -11.05048 -10.74385 -10.50664 -10.27946 -10.15556 -9.80416 -9.41883 -8.94758 -8.52167 -8.31933 -6.02977 -4.00509 2.29933 3.15548 3.31885 3.39987 3.44703 4.40560 4.46455 4.66998 5.18755 5.32153 5.44135 5.47859 5.62114 5.71544 5.87904 5.89988 6.04942 6.22807 6.33623 6.47046 6.57224 6.61209 6.64724 6.99033 7.15685 7.28594 7.73951 7.81325 8.00853 8.51595 8.98324 9.59671 11.09213 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.009179 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.118337 B = 3049.689437 C = 3663.748425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.524 4.524 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.452 5.452 14 C 0.051 3.949 15 C -0.134 4.134 16 C 0.494 3.506 17 O -0.522 6.522 18 O -0.512 6.512 19 C 0.015 3.985 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.027 0.973 24 H 0.015 0.985 25 H 0.262 0.738 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.405 0.595 30 H 0.077 0.923 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 1.810 10.111 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.061 0.939 4 C -0.044 4.044 5 C -0.562 4.562 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.175 5.175 14 C -0.077 4.077 15 C -0.154 4.154 16 C 0.336 3.664 17 O -0.411 6.411 18 O -0.323 6.323 19 C -0.114 4.114 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.263 0.737 30 H 0.095 0.905 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.713 1.004 9.672 11.278 hybrid contribution 0.143 0.924 -0.481 1.051 sum -5.571 1.928 9.191 10.919 Atomic orbital electron populations 1.21857 0.95875 1.01837 1.00645 1.22168 0.93762 0.96239 0.92803 0.93931 1.19601 0.97305 0.96178 0.91285 1.21363 0.89927 1.35076 1.09845 0.90013 1.24987 0.94682 0.95795 0.97793 1.69903 1.06503 1.45545 1.32336 0.86821 0.80385 0.79966 0.82373 1.20550 1.21521 1.18952 1.68980 1.04591 1.43263 1.00638 1.23709 0.94214 1.02862 0.86939 1.22943 0.98159 0.96458 0.97840 1.23437 0.78657 0.89103 0.75178 1.90682 1.63644 1.29992 1.56787 1.84596 1.33121 1.47168 1.67449 1.23758 0.94426 0.99383 0.93832 0.92270 0.93713 0.92572 0.95488 0.96671 0.92820 0.87502 0.90498 0.85079 0.73704 0.90479 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.18 37.16 0.34 -2.03 16 2 C 0.06 1.17 1.94 -67.71 -0.13 1.03 16 3 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.01 -0.14 3.72 -27.88 -0.10 -0.25 16 5 C -0.52 -14.27 8.62 -34.44 -0.30 -14.57 16 6 H 0.08 2.30 4.81 -52.48 -0.25 2.04 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.45 -8.42 6.13 -236.61 -1.45 -9.87 16 14 C 0.05 0.96 4.81 -7.56 -0.04 0.93 16 15 C -0.13 -2.01 4.59 -91.24 -0.42 -2.43 16 16 C 0.49 7.36 7.89 36.00 0.28 7.64 16 17 O -0.52 -9.00 16.70 -18.75 -0.31 -9.31 16 18 O -0.51 -6.33 13.42 -39.26 -0.53 -6.86 16 19 C 0.02 0.23 5.92 -7.55 -0.04 0.19 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.04 0.65 7.34 -51.93 -0.38 0.27 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 24 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.11 2.19 7.78 -51.93 -0.40 1.79 16 27 H 0.08 1.57 6.54 -51.93 -0.34 1.23 16 28 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.40 3.11 9.10 45.56 0.41 3.52 16 30 H 0.08 1.26 7.15 -51.93 -0.37 0.89 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 256.50 15.07 3.87 3.87 Total: -1.00 -31.62 256.50 -6.18 -37.80 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.35 Total: 1.50 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.51 Total: -7.63 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.68 Total: -36.33 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.84 Total: -16.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.62 -6.18 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695695816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.707 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds