Wall clock time and date at job start Mon Mar 30 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.47474 * 111.00027 * 199.02516 * 13 2 1 15 15 C 1.53507 * 87.93516 * 138.70122 * 14 13 2 16 16 C 1.50697 * 114.17761 * 220.33020 * 15 14 13 17 17 O 1.20825 * 120.00076 * 93.83564 * 16 15 14 18 18 O 1.34230 * 119.99779 * 273.84607 * 16 15 14 19 19 C 1.47476 * 110.99859 * 294.99879 * 13 2 1 20 20 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 22 22 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 23 23 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 24 24 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 25 25 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 26 26 H 1.08996 * 113.47773 * 253.47173 * 14 13 2 27 27 H 1.09004 * 113.47463 * 23.93454 * 14 13 2 28 28 H 1.09003 * 114.17100 * 87.61927 * 15 14 13 29 29 H 0.96698 * 116.99669 * 179.97438 * 18 16 15 30 30 H 1.09003 * 113.47767 * 336.05883 * 19 13 2 31 31 H 1.09002 * 113.48016 * 106.47047 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 5.5408 -1.0995 -2.4141 9 14 3.3012 -2.1078 -3.6960 10 1 2.9395 -1.1626 -4.7827 11 1 4.1599 -3.1878 -4.2448 12 1 2.0656 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 3.4230 -0.3361 1.4796 15 6 3.0497 -0.2645 2.9669 16 6 3.6877 0.8815 3.7089 17 8 3.0947 1.9270 3.8310 18 8 4.9150 0.7407 4.2340 19 6 1.6473 0.0419 2.4228 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 1.7514 -1.7715 -1.2057 24 1 1.6052 -0.2617 -2.1370 25 1 6.0252 -1.5063 -3.1496 26 1 4.1284 -1.1337 1.2468 27 1 3.7190 0.6252 1.0594 28 1 3.1262 -1.2163 3.4926 29 1 5.2830 1.5035 4.7006 30 1 1.4694 1.1041 2.2545 31 1 0.8471 -0.4348 2.9890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695695816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:48 Heat of formation + Delta-G solvation = -82.290622 kcal Electronic energy + Delta-G solvation = -14575.687226 eV Core-core repulsion = 12050.254154 eV Total energy + Delta-G solvation = -2525.433071 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.07120 -40.27264 -37.12525 -35.79695 -34.11005 -30.24242 -29.12840 -26.68912 -25.02360 -23.81583 -21.22274 -20.74845 -19.15185 -18.73772 -17.86199 -17.14491 -16.54637 -16.33256 -15.43096 -15.17440 -14.67980 -14.43472 -13.91416 -13.77422 -13.37978 -13.29366 -12.92950 -12.63364 -12.55042 -12.31227 -12.17327 -11.84750 -11.61712 -11.51594 -11.16361 -10.88735 -10.68730 -9.81908 -8.21211 -6.22492 1.09229 1.36379 1.39297 1.50293 2.05838 2.40570 3.05685 3.15172 3.33932 3.88923 4.09640 4.18515 4.25783 4.39483 4.50092 4.60076 4.69786 4.87828 4.98949 5.02445 5.07689 5.16571 5.34882 5.39130 5.53582 5.55947 5.74772 6.18680 6.37106 6.83371 6.97036 7.40571 8.93432 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.009179 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.118337 B = 3049.689437 C = 3663.748425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 H 0.027 0.973 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.462 5.462 14 C 0.047 3.953 15 C -0.117 4.117 16 C 0.500 3.500 17 O -0.547 6.547 18 O -0.508 6.508 19 C 0.023 3.977 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.022 0.978 24 H 0.019 0.981 25 H 0.262 0.738 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.157 0.843 29 H 0.427 0.573 30 H 0.070 0.930 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 1.377 10.929 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.049 4.049 3 H 0.045 0.955 4 C -0.042 4.042 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.185 5.185 14 C -0.082 4.082 15 C -0.136 4.136 16 C 0.343 3.657 17 O -0.437 6.437 18 O -0.321 6.321 19 C -0.106 4.106 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.175 0.825 29 H 0.289 0.711 30 H 0.088 0.912 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.563 0.581 10.514 12.964 hybrid contribution 0.812 1.108 -0.647 1.518 sum -6.750 1.688 9.867 12.073 Atomic orbital electron populations 1.21788 0.92677 1.02629 1.02282 1.22076 0.96277 0.94778 0.91800 0.95474 1.19561 0.94744 0.96373 0.93570 1.21749 0.92094 1.33558 1.08802 0.92185 1.25848 0.95434 0.97140 1.00473 1.70046 1.08249 1.47392 1.33469 0.85821 0.79469 0.78755 0.79559 1.19758 1.21507 1.17414 1.68926 1.04250 1.43832 1.01463 1.23444 0.94122 1.00442 0.90182 1.22872 0.97377 0.97868 0.95487 1.23284 0.79097 0.88428 0.74868 1.90680 1.64451 1.30734 1.57883 1.84541 1.31862 1.48509 1.67211 1.23759 0.95593 0.98933 0.92283 0.91818 0.91495 0.91638 0.95960 0.96285 0.92884 0.90279 0.93114 0.82526 0.71150 0.91175 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.18 71.98 0.66 -3.41 16 2 C 0.06 2.30 1.94 44.92 0.09 2.39 16 3 H 0.03 1.12 7.56 -2.39 -0.02 1.11 16 4 C 0.00 -0.23 3.72 29.85 0.11 -0.11 16 5 C -0.52 -29.09 8.62 25.60 0.22 -28.87 16 6 H 0.06 3.53 4.81 -2.91 -0.01 3.51 16 7 C 0.01 0.43 5.47 84.65 0.46 0.89 16 8 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 9 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 N -0.46 -16.72 6.13 -902.49 -5.53 -22.25 16 14 C 0.05 1.80 4.81 83.57 0.40 2.20 16 15 C -0.12 -3.31 4.59 -11.20 -0.05 -3.36 16 16 C 0.50 14.14 7.89 71.23 0.56 14.70 16 17 O -0.55 -18.09 16.70 21.97 0.37 -17.73 16 18 O -0.51 -11.63 13.42 -51.41 -0.69 -12.32 16 19 C 0.02 0.66 5.92 83.57 0.49 1.15 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.07 1.71 7.34 -2.39 -0.02 1.69 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 24 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.08 3.39 7.78 -2.39 -0.02 3.37 16 27 H 0.05 2.17 6.54 -2.38 -0.02 2.16 16 28 H 0.16 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.43 5.66 9.10 -74.06 -0.67 4.99 16 30 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -68.37 256.50 -0.31 -68.68 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.41 Total: 10.11 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 2.95 Total: -14.42 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -5.23 Total: -80.78 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.32 Total: -30.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -68.37 -0.31 -68.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695695816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.612 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds