Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.46146 * 2 1 4 4 C 1.54475 * 110.51212 * 237.38963 * 2 1 3 5 5 O 1.44431 * 104.80784 * 265.33896 * 4 2 1 6 6 C 1.44430 * 105.27041 * 319.48557 * 5 4 2 7 7 C 1.54484 * 104.80321 * 40.51185 * 6 5 4 8 8 H 1.09004 * 110.50933 * 94.66530 * 7 6 5 9 9 C 1.50699 * 110.51060 * 217.37581 * 7 6 5 10 10 O 1.21289 * 119.99960 * 114.64419 * 9 7 6 11 11 N 1.34776 * 120.00047 * 294.64284 * 9 7 6 12 12 C 1.46500 * 120.00051 * 359.97438 * 11 9 7 13 13 C 1.37091 * 120.00205 * 180.02562 * 11 9 7 14 14 H 1.07998 * 120.00495 * 24.06602 * 13 11 9 15 15 C 1.38958 * 120.00134 * 204.07156 * 13 11 9 16 16 N 1.31409 * 119.99525 * 13.05086 * 15 13 11 17 17 Si 1.86801 * 120.00098 * 193.05147 * 15 13 11 18 18 H 1.48493 * 109.46881 * 89.99744 * 17 15 13 19 19 H 1.48495 * 109.47142 * 209.99781 * 17 15 13 20 20 H 1.48504 * 109.47079 * 329.99876 * 17 15 13 21 21 H 1.09001 * 109.47430 * 181.15658 * 1 2 3 22 22 H 1.08998 * 109.46984 * 61.15089 * 1 2 3 23 23 H 1.09004 * 109.46954 * 301.15394 * 1 2 3 24 24 H 1.09007 * 110.37158 * 24.16730 * 4 2 1 25 25 H 1.09000 * 110.37767 * 146.50394 * 4 2 1 26 26 H 1.08999 * 110.37094 * 159.33855 * 6 5 4 27 27 H 1.08997 * 110.37494 * 281.57320 * 6 5 4 28 28 H 1.09002 * 109.46904 * 86.33587 * 12 11 9 29 29 H 1.08994 * 109.47547 * 206.33858 * 12 11 9 30 30 H 1.09005 * 109.47074 * 326.33768 * 12 11 9 31 31 H 0.97003 * 119.99419 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7797 -1.2187 5 8 2.3069 -2.1169 -0.7264 6 6 2.8757 -1.9430 0.5897 7 6 2.0714 -0.7829 1.2172 8 1 1.2490 -1.1699 1.8189 9 6 2.9708 0.0929 2.0508 10 8 3.1743 1.2420 1.7202 11 7 3.5490 -0.4006 3.1637 12 6 3.3027 -1.7884 3.5633 13 6 4.3668 0.3963 3.9223 14 1 4.2595 1.4703 3.8859 15 6 5.3341 -0.1779 4.7382 16 7 5.6424 -1.4476 4.5981 17 14 6.1960 0.8552 6.0341 18 1 5.4360 0.7863 7.3080 19 1 7.5701 0.3347 6.2487 20 1 6.2670 2.2660 5.5758 21 1 -0.3634 -1.0274 0.0207 22 1 -0.3633 0.4958 -0.9001 23 1 -0.3633 0.5317 0.8795 24 1 1.3310 -0.7949 -2.0188 25 1 3.0023 -0.3354 -1.5706 26 1 2.7533 -2.8518 1.1790 27 1 3.9305 -1.6789 0.5154 28 1 4.0108 -2.4436 3.0559 29 1 3.4281 -1.8837 4.6418 30 1 2.2861 -2.0704 3.2894 31 1 6.3174 -1.8484 5.1680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705248956.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = -100.484880 kcal Electronic energy + Delta-G solvation = -14935.189699 eV Core-core repulsion = 12408.967665 eV Total energy + Delta-G solvation = -2526.222034 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35789 -39.32800 -36.74733 -34.28230 -33.74158 -31.11912 -28.09393 -27.32687 -26.51927 -24.15186 -22.05289 -20.26093 -18.94610 -18.24735 -17.23886 -16.88860 -16.45342 -16.00563 -15.79287 -15.33409 -14.68218 -14.19346 -13.86350 -13.46317 -13.38699 -13.19230 -13.16553 -12.89251 -12.60480 -12.34856 -12.17790 -11.86777 -11.82023 -11.61352 -11.02698 -10.75449 -10.34601 -9.70881 -8.37303 -6.02415 1.35599 1.39880 1.51870 1.95549 2.25139 2.83489 3.04337 3.16148 3.53438 3.85787 3.91819 4.14908 4.19003 4.27924 4.59113 4.62324 4.72182 4.78889 4.79870 4.91456 5.00581 5.03570 5.23132 5.33021 5.36695 5.42266 5.75649 6.07578 6.45086 7.13008 7.42669 7.98424 8.65830 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052972 B = 0.008794 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.449487 B = 3183.274228 C = 3424.815674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 H 0.077 0.923 4 C 0.050 3.950 5 O -0.380 6.380 6 C 0.067 3.933 7 C -0.123 4.123 8 H 0.115 0.885 9 C 0.443 3.557 10 O -0.630 6.630 11 N -0.459 5.459 12 C 0.117 3.883 13 C -0.348 4.348 14 H 0.070 0.930 15 C -0.001 4.001 16 N -0.893 5.893 17 Si 0.989 3.011 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.277 1.277 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.124 0.876 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -3.347 -5.039 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 H 0.096 0.904 4 C -0.026 4.026 5 O -0.299 6.299 6 C -0.011 4.011 7 C -0.145 4.145 8 H 0.133 0.867 9 C 0.233 3.767 10 O -0.518 6.518 11 N -0.176 5.176 12 C -0.025 4.025 13 C -0.476 4.476 14 H 0.088 0.912 15 C -0.203 4.203 16 N -0.531 5.531 17 Si 0.813 3.187 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.202 1.202 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.142 0.858 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.400 -3.175 -5.186 9.578 hybrid contribution 0.919 0.739 0.928 1.500 sum -6.482 -2.436 -4.258 8.129 Atomic orbital electron populations 1.21747 0.91662 1.02725 1.02587 1.22505 0.98475 1.00302 0.92697 0.90437 1.23628 1.00518 0.81776 0.96714 1.89049 1.83018 1.27030 1.30809 1.23307 0.95520 0.98280 0.83943 1.22582 0.98359 0.96117 0.97417 0.86686 1.20690 0.85562 0.88645 0.81836 1.90440 1.67892 1.21271 1.72168 1.43811 1.40891 1.12264 1.20673 1.21535 0.98182 0.81636 1.01191 1.19605 1.14441 0.91245 1.22286 0.91232 1.26091 0.96226 0.97611 1.00355 1.70052 1.31648 1.12781 1.38662 0.84996 0.77622 0.77942 0.78164 1.18893 1.19780 1.20211 0.91198 0.90372 0.93072 0.85849 0.93252 0.86611 0.94440 0.93333 0.92341 0.91540 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.94 71.98 0.64 -2.54 16 2 C -0.12 -3.92 3.30 -9.78 -0.03 -3.95 16 3 H 0.08 3.02 6.51 -2.39 -0.02 3.00 16 4 C 0.05 1.44 7.18 72.48 0.52 1.96 16 5 O -0.38 -12.28 11.65 -148.98 -1.74 -14.01 16 6 C 0.07 2.31 5.99 72.49 0.43 2.75 16 7 C -0.12 -4.53 2.23 -10.52 -0.02 -4.56 16 8 H 0.12 3.70 6.90 -2.39 -0.02 3.69 16 9 C 0.44 21.98 6.88 87.66 0.60 22.59 16 10 O -0.63 -36.16 14.99 -3.06 -0.05 -36.21 16 11 N -0.46 -23.81 3.01 -658.89 -1.98 -25.80 16 12 C 0.12 5.11 7.32 127.77 0.94 6.04 16 13 C -0.35 -19.95 9.24 84.04 0.78 -19.17 16 14 H 0.07 4.28 7.44 -2.91 -0.02 4.26 16 15 C 0.00 -0.03 5.04 84.93 0.43 0.40 16 16 N -0.89 -47.15 10.84 21.67 0.23 -46.91 16 17 Si 0.99 42.50 29.57 68.60 2.03 44.53 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.12 2.68 7.87 -2.38 -0.02 2.66 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.12 3.49 7.32 -2.39 -0.02 3.47 16 27 H 0.04 1.50 7.86 -2.39 -0.02 1.48 16 28 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 29 H 0.06 2.70 6.82 -2.39 -0.02 2.69 16 30 H 0.07 2.30 6.32 -2.38 -0.02 2.29 16 31 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -66.53 252.87 3.90 -62.63 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.11 Total: 12.24 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 4.29 Total: 3.52 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.75 Total: -72.71 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -1.78 Total: -50.22 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.53 3.90 -62.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705248956.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.850 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds