Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.56316 * 2 1 4 4 C 1.54478 * 110.51075 * 122.67785 * 2 1 3 5 5 O 1.44425 * 104.90155 * 142.68023 * 4 2 1 6 6 C 1.44427 * 105.27174 * 319.43305 * 5 4 2 7 7 C 1.54475 * 104.80862 * 40.51238 * 6 5 4 8 8 H 1.08994 * 110.51409 * 217.38001 * 7 6 5 9 9 C 1.50702 * 110.51460 * 94.79938 * 7 6 5 10 10 O 1.21290 * 119.99842 * 259.80327 * 9 7 6 11 11 N 1.34773 * 119.99616 * 79.79984 * 9 7 6 12 12 C 1.46498 * 120.00075 * 2.68118 * 11 9 7 13 13 C 1.37096 * 119.99832 * 182.68354 * 11 9 7 14 14 H 1.08003 * 119.99866 * 322.47659 * 13 11 9 15 15 C 1.38952 * 120.00424 * 142.48261 * 13 11 9 16 16 N 1.31412 * 120.00183 * 168.09468 * 15 13 11 17 17 Si 1.86802 * 119.99517 * 348.09044 * 15 13 11 18 18 H 1.48497 * 109.46989 * 85.99912 * 17 15 13 19 19 H 1.48503 * 109.47044 * 206.00011 * 17 15 13 20 20 H 1.48499 * 109.47337 * 325.99729 * 17 15 13 21 21 H 1.09000 * 109.47643 * 298.77614 * 1 2 3 22 22 H 1.08998 * 109.47043 * 58.78025 * 1 2 3 23 23 H 1.09009 * 109.47226 * 178.77202 * 1 2 3 24 24 H 1.08999 * 110.37410 * 23.79141 * 4 2 1 25 25 H 1.08996 * 110.37368 * 261.56842 * 4 2 1 26 26 H 1.08999 * 110.36996 * 159.34556 * 6 5 4 27 27 H 1.09003 * 110.37101 * 281.67392 * 6 5 4 28 28 H 1.08995 * 109.47042 * 35.43592 * 12 11 9 29 29 H 1.09001 * 109.46908 * 155.43463 * 12 11 9 30 30 H 1.09002 * 109.47145 * 275.43378 * 12 11 9 31 31 H 0.97001 * 119.99612 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7812 1.2178 5 8 3.2410 -1.4712 0.7264 6 6 2.8789 -1.9442 -0.5893 7 6 2.0747 -0.7848 -1.2181 8 1 1.2534 -1.1725 -1.8208 9 6 2.9740 0.0896 -2.0534 10 8 3.3894 1.1368 -1.6039 11 7 3.3166 -0.2920 -3.2997 12 6 2.7681 -1.5276 -3.8643 13 6 4.1785 0.4760 -4.0392 14 1 4.1282 1.5533 -3.9801 15 6 5.1167 -0.1314 -4.8647 16 7 5.7805 0.5854 -5.7437 17 14 5.4345 -1.9669 -4.7250 18 1 4.4580 -2.7038 -5.5667 19 1 6.8131 -2.2672 -5.1881 20 1 5.2852 -2.3887 -3.3090 21 1 -0.3634 0.4947 0.9007 22 1 -0.3633 0.5327 -0.8788 23 1 -0.3634 -1.0275 -0.0220 24 1 1.3285 -1.4969 1.5702 25 1 2.3445 -0.0940 2.0185 26 1 3.7730 -2.1490 -1.1782 27 1 2.2601 -2.8384 -0.5141 28 1 1.7438 -1.6623 -3.5170 29 1 2.7776 -1.4653 -4.9525 30 1 3.3749 -2.3743 -3.5435 31 1 6.4357 0.1613 -6.3197 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705248962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -72.257858 kcal Electronic energy + Delta-G solvation = -15033.017276 eV Core-core repulsion = 12508.019258 eV Total energy + Delta-G solvation = -2524.998018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93664 -37.76655 -34.85634 -33.21171 -32.07066 -29.80388 -26.49375 -26.12516 -25.03320 -22.86441 -20.53860 -18.70101 -17.08599 -16.44551 -15.96363 -15.48424 -15.36462 -14.81166 -14.07172 -13.66302 -13.06042 -12.94771 -12.60054 -12.47915 -12.18841 -12.02655 -11.84165 -11.23427 -10.80628 -10.75822 -10.63384 -10.48550 -10.29540 -9.93348 -9.59627 -9.08259 -8.50101 -7.74541 -6.34487 -3.99734 3.04817 3.19982 3.22700 3.63123 4.14442 4.23976 4.34140 4.73899 4.99488 5.08755 5.21416 5.27954 5.41475 5.56639 5.59739 5.68241 5.79650 5.84571 5.88592 5.99974 6.04043 6.12215 6.19700 6.30760 6.56781 7.00382 7.57255 8.27762 8.51616 8.95554 9.32028 9.75138 10.78066 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.010395 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.319699 B = 2693.055820 C = 2884.399742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 H 0.106 0.894 4 C 0.051 3.949 5 O -0.370 6.370 6 C 0.060 3.940 7 C -0.140 4.140 8 H 0.097 0.903 9 C 0.477 3.523 10 O -0.556 6.556 11 N -0.473 5.473 12 C 0.054 3.946 13 C -0.314 4.314 14 H 0.106 0.894 15 C 0.056 3.944 16 N -0.875 5.875 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.268 1.268 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -7.643 7.962 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 H 0.125 0.875 4 C -0.025 4.025 5 O -0.289 6.289 6 C -0.018 4.018 7 C -0.162 4.162 8 H 0.115 0.885 9 C 0.264 3.736 10 O -0.436 6.436 11 N -0.195 5.195 12 C -0.090 4.090 13 C -0.441 4.441 14 H 0.124 0.876 15 C -0.149 4.149 16 N -0.512 5.512 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.193 1.193 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.421 -7.123 8.111 14.328 hybrid contribution 0.056 -1.086 -0.347 1.142 sum -9.365 -8.209 7.764 14.676 Atomic orbital electron populations 1.21785 0.94332 1.01508 1.02082 1.22599 0.95711 1.02496 0.92921 0.87545 1.23469 0.87725 0.94667 0.96686 1.89135 1.35393 1.73629 1.30694 1.23310 0.99702 0.94636 0.84104 1.22805 0.98903 0.96980 0.97536 0.88530 1.19892 0.84464 0.87829 0.81381 1.90532 1.57120 1.25094 1.70899 1.43648 1.42191 1.21753 1.11886 1.22144 0.97728 0.88381 1.00761 1.19123 1.11577 0.92502 1.20888 0.87609 1.25400 0.95192 0.98647 0.95656 1.69669 1.25164 1.36664 1.19701 0.86896 0.77561 0.85092 0.78708 1.20072 1.21635 1.19325 0.92381 0.92194 0.92806 0.92670 0.89327 0.88878 0.91933 0.92235 0.90277 0.94039 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.95 37.16 0.33 -1.30 16 2 C -0.12 -1.84 3.29 -88.89 -0.29 -2.14 16 3 H 0.11 1.98 6.63 -51.93 -0.34 1.63 16 4 C 0.05 0.74 7.18 37.93 0.27 1.01 16 5 O -0.37 -6.69 11.65 -35.23 -0.41 -7.10 16 6 C 0.06 1.00 7.00 37.93 0.27 1.26 16 7 C -0.14 -2.45 2.35 -90.05 -0.21 -2.66 16 8 H 0.10 1.42 6.11 -51.93 -0.32 1.10 16 9 C 0.48 11.27 6.76 -10.99 -0.07 11.20 16 10 O -0.56 -15.40 15.27 5.55 0.08 -15.32 16 11 N -0.47 -11.57 2.65 -122.19 -0.32 -11.89 16 12 C 0.05 1.04 7.71 59.85 0.46 1.50 16 13 C -0.31 -9.05 9.42 -14.93 -0.14 -9.19 16 14 H 0.11 3.44 7.89 -52.48 -0.41 3.03 16 15 C 0.06 1.57 5.34 -17.47 -0.09 1.48 16 16 N -0.87 -25.84 13.96 55.50 0.77 -25.07 16 17 Si 0.89 20.81 24.13 -169.99 -4.10 16.70 16 18 H -0.27 -5.87 6.85 56.52 0.39 -5.48 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.15 6.63 56.52 0.37 -5.78 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.73 7.86 -51.93 -0.41 1.32 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.91 6.29 -51.93 -0.33 0.58 16 29 H 0.08 1.56 6.72 -51.93 -0.35 1.21 16 30 H 0.04 0.77 5.34 -51.93 -0.28 0.50 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -33.14 249.96 -3.82 -36.96 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.13 Total: 0.78 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 0.52 Total: 1.16 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.45 Total: -36.95 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.33 Total: -22.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.10 Total: 16.70 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.14 -3.82 -36.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705248962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.296 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds