Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.56316 * 2 1 4 4 C 1.54478 * 110.51075 * 122.67785 * 2 1 3 5 5 O 1.44425 * 104.90155 * 142.68023 * 4 2 1 6 6 C 1.44427 * 105.27174 * 319.43305 * 5 4 2 7 7 C 1.54475 * 104.80862 * 40.51238 * 6 5 4 8 8 H 1.08994 * 110.51409 * 217.38001 * 7 6 5 9 9 C 1.50702 * 110.51460 * 94.79938 * 7 6 5 10 10 O 1.21290 * 119.99842 * 259.80327 * 9 7 6 11 11 N 1.34773 * 119.99616 * 79.79984 * 9 7 6 12 12 C 1.46498 * 120.00075 * 2.68118 * 11 9 7 13 13 C 1.37096 * 119.99832 * 182.68354 * 11 9 7 14 14 H 1.08003 * 119.99866 * 322.47659 * 13 11 9 15 15 C 1.38952 * 120.00424 * 142.48261 * 13 11 9 16 16 N 1.31412 * 120.00183 * 168.09468 * 15 13 11 17 17 Si 1.86802 * 119.99517 * 348.09044 * 15 13 11 18 18 H 1.48497 * 109.46989 * 85.99912 * 17 15 13 19 19 H 1.48503 * 109.47044 * 206.00011 * 17 15 13 20 20 H 1.48499 * 109.47337 * 325.99729 * 17 15 13 21 21 H 1.09000 * 109.47643 * 298.77614 * 1 2 3 22 22 H 1.08998 * 109.47043 * 58.78025 * 1 2 3 23 23 H 1.09009 * 109.47226 * 178.77202 * 1 2 3 24 24 H 1.08999 * 110.37410 * 23.79141 * 4 2 1 25 25 H 1.08996 * 110.37368 * 261.56842 * 4 2 1 26 26 H 1.08999 * 110.36996 * 159.34556 * 6 5 4 27 27 H 1.09003 * 110.37101 * 281.67392 * 6 5 4 28 28 H 1.08995 * 109.47042 * 35.43592 * 12 11 9 29 29 H 1.09001 * 109.46908 * 155.43463 * 12 11 9 30 30 H 1.09002 * 109.47145 * 275.43378 * 12 11 9 31 31 H 0.97001 * 119.99612 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7812 1.2178 5 8 3.2410 -1.4712 0.7264 6 6 2.8789 -1.9442 -0.5893 7 6 2.0747 -0.7848 -1.2181 8 1 1.2534 -1.1725 -1.8208 9 6 2.9740 0.0896 -2.0534 10 8 3.3894 1.1368 -1.6039 11 7 3.3166 -0.2920 -3.2997 12 6 2.7681 -1.5276 -3.8643 13 6 4.1785 0.4760 -4.0392 14 1 4.1282 1.5533 -3.9801 15 6 5.1167 -0.1314 -4.8647 16 7 5.7805 0.5854 -5.7437 17 14 5.4345 -1.9669 -4.7250 18 1 4.4580 -2.7038 -5.5667 19 1 6.8131 -2.2672 -5.1881 20 1 5.2852 -2.3887 -3.3090 21 1 -0.3634 0.4947 0.9007 22 1 -0.3633 0.5327 -0.8788 23 1 -0.3634 -1.0275 -0.0220 24 1 1.3285 -1.4969 1.5702 25 1 2.3445 -0.0940 2.0185 26 1 3.7730 -2.1490 -1.1782 27 1 2.2601 -2.8384 -0.5141 28 1 1.7438 -1.6623 -3.5170 29 1 2.7776 -1.4653 -4.9525 30 1 3.3749 -2.3743 -3.5435 31 1 6.4357 0.1613 -6.3197 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705248962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -98.298473 kcal Electronic energy + Delta-G solvation = -15034.146482 eV Core-core repulsion = 12508.019258 eV Total energy + Delta-G solvation = -2526.127224 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.43533 -39.37501 -36.79600 -34.49307 -34.12714 -31.17169 -28.19973 -27.28522 -26.80128 -24.28469 -21.91650 -20.32529 -19.11921 -18.09380 -17.55309 -16.95799 -16.84578 -16.15519 -15.72426 -15.35312 -14.68773 -14.38218 -14.13098 -13.88821 -13.80798 -13.51960 -13.18126 -12.63557 -12.53029 -12.26453 -12.01813 -11.80923 -11.78563 -11.61812 -11.15337 -10.80871 -10.32732 -9.74069 -8.50788 -6.22779 1.20752 1.31312 1.42346 1.85625 2.17394 2.65214 2.91727 3.05412 3.48701 3.77391 3.96532 4.08640 4.17659 4.33726 4.43925 4.52485 4.54522 4.65632 4.69196 4.76444 4.85324 4.88664 5.07590 5.27905 5.40201 5.51578 5.84717 5.98562 6.53093 6.89068 7.24991 7.81818 8.66811 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.010395 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.319699 B = 2693.055820 C = 2884.399742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 H 0.062 0.938 4 C 0.051 3.949 5 O -0.404 6.404 6 C 0.060 3.940 7 C -0.132 4.132 8 H 0.137 0.863 9 C 0.465 3.535 10 O -0.615 6.615 11 N -0.485 5.485 12 C 0.045 3.955 13 C -0.335 4.335 14 H 0.039 0.961 15 C 0.003 3.997 16 N -0.924 5.924 17 Si 0.962 3.038 18 H -0.229 1.229 19 H -0.293 1.293 20 H -0.259 1.259 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 -11.629 8.932 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 H 0.080 0.920 4 C -0.025 4.025 5 O -0.323 6.323 6 C -0.017 4.017 7 C -0.154 4.154 8 H 0.154 0.846 9 C 0.255 3.745 10 O -0.500 6.500 11 N -0.207 5.207 12 C -0.097 4.097 13 C -0.463 4.463 14 H 0.057 0.943 15 C -0.197 4.197 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.152 1.152 19 H -0.220 1.220 20 H -0.183 1.183 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.762 -11.124 9.069 18.556 hybrid contribution 0.773 0.317 -0.616 1.038 sum -10.988 -10.807 8.453 17.578 Atomic orbital electron populations 1.21754 0.90839 1.03618 1.02677 1.22604 0.98521 1.00008 0.92881 0.91983 1.23683 0.87508 0.95350 0.95936 1.89100 1.37639 1.74240 1.31345 1.23465 0.99366 0.95696 0.83160 1.22876 0.98597 0.96422 0.97489 0.84585 1.21138 0.84285 0.87613 0.81459 1.90499 1.59361 1.27952 1.72188 1.43796 1.41783 1.22939 1.12180 1.22415 1.00635 0.86056 1.00590 1.18729 1.14294 0.90587 1.22662 0.94259 1.26325 0.94075 1.04968 0.94372 1.69819 1.26046 1.39580 1.20801 0.85770 0.78170 0.77780 0.79832 1.15174 1.22031 1.18337 0.90708 0.92960 0.89711 0.88440 0.89171 0.91295 0.86581 0.87291 0.90714 0.92212 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.95 71.98 0.64 -1.91 16 2 C -0.12 -3.52 3.29 -9.68 -0.03 -3.55 16 3 H 0.06 2.37 6.63 -2.39 -0.02 2.35 16 4 C 0.05 1.31 7.18 72.48 0.52 1.83 16 5 O -0.40 -13.62 11.65 -148.98 -1.74 -15.35 16 6 C 0.06 1.77 7.00 72.48 0.51 2.28 16 7 C -0.13 -4.25 2.35 -10.42 -0.02 -4.28 16 8 H 0.14 3.25 6.11 -2.39 -0.01 3.23 16 9 C 0.46 22.26 6.76 87.66 0.59 22.86 16 10 O -0.62 -36.27 15.27 -3.06 -0.05 -36.31 16 11 N -0.49 -23.81 2.65 -658.90 -1.74 -25.56 16 12 C 0.04 1.58 7.71 127.77 0.99 2.57 16 13 C -0.33 -20.33 9.42 84.04 0.79 -19.54 16 14 H 0.04 2.82 7.89 -2.91 -0.02 2.80 16 15 C 0.00 0.19 5.34 84.93 0.45 0.64 16 16 N -0.92 -56.83 13.96 21.66 0.30 -56.53 16 17 Si 0.96 41.99 24.13 68.60 1.66 43.65 16 18 H -0.23 -8.33 6.85 99.48 0.68 -7.65 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -10.83 6.63 99.48 0.66 -10.17 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 24 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.11 2.73 6.29 -2.39 -0.02 2.72 16 29 H 0.07 2.71 6.72 -2.39 -0.02 2.69 16 30 H 0.06 1.92 5.34 -2.39 -0.01 1.91 16 31 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.61 249.96 3.92 -76.70 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.05 Total: 12.51 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.44 Total: 0.90 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -1.44 Total: -82.09 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -1.78 Total: -51.66 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.66 Total: 43.65 kcal Total: -80.61 3.92 -76.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705248962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.600 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds