Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47440 * 2 1 4 4 C 1.42896 * 114.00280 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.88303 * 333.87353 * 4 3 2 6 6 C 1.55156 * 111.00274 * 210.00327 * 4 3 2 7 7 C 1.54325 * 102.94164 * 206.37987 * 6 4 3 8 8 N 1.47022 * 107.26819 * 22.19455 * 7 6 4 9 9 C 1.34777 * 125.64657 * 181.02607 * 8 7 6 10 10 O 1.21693 * 120.00018 * 180.02562 * 9 8 7 11 11 C 1.46377 * 120.00307 * 0.29026 * 9 8 7 12 12 H 1.08001 * 119.99387 * 359.73219 * 11 9 8 13 13 C 1.40043 * 120.00458 * 179.72666 * 11 9 8 14 14 N 1.30674 * 120.00000 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00093 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47199 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46966 * 119.99861 * 15 13 11 18 18 H 1.48498 * 109.47127 * 239.99959 * 15 13 11 19 19 C 1.47427 * 108.70605 * 1.28158 * 8 7 6 20 20 H 1.09003 * 109.47081 * 59.99473 * 1 2 3 21 21 H 1.08998 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46565 * 299.99905 * 1 2 3 23 23 H 1.09002 * 109.46565 * 240.00095 * 2 1 3 24 24 H 1.08994 * 109.47560 * 120.00173 * 2 1 3 25 25 H 1.09004 * 110.72360 * 88.01697 * 6 4 3 26 26 H 1.09005 * 110.71776 * 324.73947 * 6 4 3 27 27 H 1.08992 * 109.88157 * 262.77254 * 7 6 4 28 28 H 1.09004 * 109.88385 * 141.60403 * 7 6 4 29 29 H 0.97004 * 120.00230 * 180.02562 * 14 13 11 30 30 H 1.09001 * 110.36238 * 94.48400 * 19 8 7 31 31 H 1.08998 * 110.36877 * 216.80983 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8907 0.5792 0.4476 6 6 3.8866 2.7543 0.7237 7 6 5.2483 3.0583 0.0643 8 7 5.2613 2.3829 -1.2415 9 6 6.2848 2.3883 -2.1184 10 8 6.1842 1.7924 -3.1747 11 6 7.5195 3.1062 -1.7979 12 1 7.6087 3.6351 -0.8605 13 6 8.5851 3.1070 -2.7066 14 7 8.4770 2.4674 -3.8409 15 14 10.1610 4.0226 -2.2972 16 1 10.0307 4.6599 -0.9622 17 1 11.2982 3.0676 -2.2803 18 1 10.4073 5.0675 -3.3232 19 6 3.9672 1.7039 -1.4356 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.0067 2.5764 1.7924 26 1 3.1812 3.5657 0.5437 27 1 6.0559 2.6752 0.6880 28 1 5.3617 4.1336 -0.0734 29 1 9.2153 2.4676 -4.4702 30 1 3.2838 2.3428 -1.9950 31 1 4.1103 0.7553 -1.9529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706494616.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = -112.189200 kcal Electronic energy + Delta-G solvation = -14286.345525 eV Core-core repulsion = 11759.615954 eV Total energy + Delta-G solvation = -2526.729571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47926 -38.81766 -36.96377 -34.68514 -32.56972 -30.99082 -29.82299 -27.90546 -24.38983 -23.57736 -22.08731 -21.12221 -18.71790 -18.11416 -17.67864 -16.56976 -16.21033 -15.93613 -15.61387 -15.09630 -14.62636 -14.15206 -13.71881 -13.70670 -13.31317 -13.04970 -12.96765 -12.75164 -12.67713 -12.38264 -12.18235 -12.05041 -11.94245 -11.58546 -10.97829 -10.56167 -9.94138 -9.17179 -8.33687 -6.90054 1.39466 1.39770 1.58575 2.19863 2.39465 2.46083 3.04000 3.52958 3.58924 3.76123 3.99259 4.18661 4.30853 4.35395 4.45940 4.49982 4.71841 4.74533 4.92700 4.95103 4.98105 5.05418 5.21842 5.29118 5.29764 5.57322 5.97881 6.23142 6.35834 6.82390 7.40787 8.39172 8.62702 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066773 B = 0.006659 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.229110 B = 4203.812133 C = 4538.998276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.386 6.386 4 C 0.089 3.911 5 H 0.086 0.914 6 C -0.112 4.112 7 C 0.114 3.886 8 N -0.653 5.653 9 C 0.548 3.452 10 O -0.635 6.635 11 C -0.562 4.562 12 H 0.091 0.909 13 C 0.026 3.974 14 N -0.823 5.823 15 Si 1.003 2.997 16 H -0.244 1.244 17 H -0.267 1.267 18 H -0.268 1.268 19 C 0.092 3.908 20 H 0.054 0.946 21 H 0.091 0.909 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.276 0.724 30 H 0.043 0.957 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -0.901 12.204 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.304 6.304 4 C 0.030 3.970 5 H 0.104 0.896 6 C -0.149 4.149 7 C -0.009 4.009 8 N -0.392 5.392 9 C 0.356 3.644 10 O -0.522 6.522 11 C -0.598 4.598 12 H 0.109 0.891 13 C -0.189 4.189 14 N -0.453 5.453 15 Si 0.821 3.179 16 H -0.167 1.167 17 H -0.191 1.191 18 H -0.193 1.193 19 C -0.032 4.032 20 H 0.073 0.927 21 H 0.110 0.890 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.084 -1.124 11.434 14.646 hybrid contribution 0.760 -0.068 -0.587 0.963 sum -8.324 -1.192 10.847 13.724 Atomic orbital electron populations 1.21747 0.92107 1.03504 1.02894 1.22798 0.96901 0.82877 1.00676 1.87874 1.19730 1.28112 1.94727 1.23154 0.81163 0.99629 0.93007 0.89582 1.22714 0.94827 0.96576 1.00826 1.21868 0.97870 0.97254 0.83866 1.48447 1.14485 1.55944 1.20314 1.18541 0.83215 0.80891 0.81782 1.90549 1.83211 1.50953 1.27501 1.21430 0.97894 1.34348 1.06142 0.89092 1.27081 1.03908 0.94547 0.93330 1.70209 1.32638 1.34287 1.08158 0.84906 0.75143 0.77922 0.79922 1.16664 1.19145 1.19271 1.22348 0.86228 0.96207 0.98435 0.92692 0.89034 0.91356 0.94097 0.91628 0.86666 0.89512 0.91726 0.92284 0.91428 0.93884 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.04 0.99 6.49 71.98 0.47 1.45 16 3 O -0.39 -11.11 10.15 -148.98 -1.51 -12.62 16 4 C 0.09 2.78 3.56 32.06 0.11 2.89 16 5 H 0.09 2.47 7.83 -2.38 -0.02 2.45 16 6 C -0.11 -3.06 6.68 31.78 0.21 -2.85 16 7 C 0.11 4.17 6.05 86.73 0.52 4.69 16 8 N -0.65 -31.89 3.32 -816.43 -2.71 -34.60 16 9 C 0.55 33.67 7.78 86.36 0.67 34.34 16 10 O -0.63 -44.94 15.27 -4.33 -0.07 -45.00 16 11 C -0.56 -32.66 9.06 24.83 0.23 -32.43 16 12 H 0.09 4.72 7.16 -2.91 -0.02 4.70 16 13 C 0.03 1.48 5.50 85.30 0.47 1.95 16 14 N -0.82 -51.47 11.83 21.83 0.26 -51.22 16 15 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 16 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 C 0.09 3.94 6.65 86.93 0.58 4.52 16 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.24 8.12 -2.39 -0.02 1.23 16 25 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.28 15.48 8.29 -92.71 -0.77 14.71 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 Total: -1.00 -78.80 266.23 3.09 -75.70 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.10 Total: 11.81 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 4.00 Total: 12.76 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.46 Total: -85.82 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -1.58 Total: -57.62 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -78.80 3.09 -75.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706494616.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.489 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds