Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46761 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00142 * 2 1 3 5 5 H 1.07989 * 120.00097 * 274.92537 * 4 2 1 6 6 C 1.37877 * 119.99950 * 94.92798 * 4 2 1 7 7 N 1.31512 * 120.00507 * 184.77918 * 6 4 2 8 8 Si 1.86807 * 119.99858 * 4.77868 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.85377 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.85003 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.85316 * 8 6 4 12 12 C 1.53001 * 109.47325 * 120.00037 * 2 1 3 13 13 C 1.50699 * 109.87864 * 65.70430 * 12 2 1 14 14 O 1.20823 * 120.00122 * 334.99772 * 13 12 2 15 15 O 1.34225 * 120.00066 * 154.99906 * 13 12 2 16 16 C 1.54314 * 109.88809 * 304.67288 * 12 2 1 17 17 C 1.55398 * 102.89940 * 218.40916 * 16 12 2 18 18 C 1.54908 * 101.74394 * 35.47919 * 17 16 12 19 19 N 1.47439 * 109.89036 * 186.73371 * 12 2 1 20 20 H 1.08991 * 109.47401 * 52.52213 * 1 2 3 21 21 H 1.09001 * 109.47555 * 292.51397 * 1 2 3 22 22 H 1.09003 * 109.46806 * 172.51608 * 1 2 3 23 23 H 0.96994 * 120.00655 * 179.97438 * 7 6 4 24 24 H 0.96707 * 117.00190 * 179.97438 * 15 13 12 25 25 H 1.09001 * 110.70751 * 336.69209 * 16 12 2 26 26 H 1.08998 * 110.71011 * 99.92959 * 16 12 2 27 27 H 1.09005 * 110.86925 * 277.39496 * 17 16 12 28 28 H 1.08994 * 111.06242 * 153.64948 * 17 16 12 29 29 H 1.08996 * 110.37354 * 204.19520 * 18 17 16 30 30 H 1.08996 * 110.37647 * 81.84849 * 18 17 16 31 31 H 1.00902 * 111.00420 * 240.68875 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1366 -1.7852 -1.2287 6 6 2.3588 0.0120 -2.3586 7 7 2.7071 -0.6131 -3.4619 8 14 2.3065 1.8789 -2.3197 9 1 3.5904 2.3991 -1.7846 10 1 2.0976 2.3970 -3.6957 11 1 1.1900 2.3249 -1.4481 12 6 2.0400 -0.7213 1.2492 13 6 1.6611 -2.1786 1.1901 14 8 0.7068 -2.5287 0.5370 15 8 2.3838 -3.0878 1.8630 16 6 1.4367 -0.0728 2.5129 17 6 2.6195 -0.1098 3.5202 18 6 3.8337 0.1352 2.5899 19 7 3.5054 -0.5874 1.3426 20 1 -0.3634 0.6252 -0.8155 21 1 -0.3634 0.3935 0.9493 22 1 -0.3633 -1.0190 -0.1339 23 1 2.9364 -0.1050 -4.2556 24 1 2.1019 -4.0104 1.7950 25 1 1.1345 0.9550 2.3118 26 1 0.5946 -0.6581 2.8819 27 1 2.6880 -1.0847 4.0030 28 1 2.5284 0.6848 4.2607 29 1 4.7415 -0.2709 3.0360 30 1 3.9510 1.2005 2.3917 31 1 3.9533 -1.4913 1.3196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707965273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -87.032857 kcal Electronic energy + Delta-G solvation = -15376.527108 eV Core-core repulsion = 12850.888398 eV Total energy + Delta-G solvation = -2525.638710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.30338 -37.63798 -35.73326 -33.51232 -31.33737 -29.83297 -27.80732 -25.04390 -23.05357 -21.61829 -20.79583 -18.72923 -17.53523 -17.00973 -16.30145 -15.38040 -14.49777 -14.37030 -13.92032 -13.23651 -12.99335 -12.80792 -12.24513 -12.02167 -11.62626 -11.44144 -11.15874 -11.07546 -10.76644 -10.66957 -10.50875 -10.38527 -9.92048 -9.51581 -9.43670 -8.75829 -8.35442 -7.85654 -5.90151 -3.85889 2.88822 3.41153 3.47391 3.49199 3.57783 4.57686 4.66420 4.94666 5.08501 5.28453 5.43431 5.62272 5.73366 5.89031 5.97064 6.08294 6.16121 6.36594 6.46915 6.58660 6.81693 6.87651 7.00737 7.17942 7.44967 7.69607 7.88800 7.95965 8.56134 8.65959 9.13240 9.72919 11.23886 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.013777 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.136445 B = 2031.916561 C = 2307.013018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.039 3.961 3 H 0.047 0.953 4 C -0.485 4.485 5 H 0.069 0.931 6 C 0.071 3.929 7 N -0.907 5.907 8 Si 0.878 3.122 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.268 1.268 12 C 0.142 3.858 13 C 0.475 3.525 14 O -0.488 6.488 15 O -0.532 6.532 16 C -0.129 4.129 17 C -0.156 4.156 18 C 0.047 3.953 19 N -0.650 5.650 20 H 0.041 0.959 21 H 0.018 0.982 22 H 0.075 0.925 23 H 0.260 0.740 24 H 0.399 0.601 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 0.418 13.768 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.087 0.913 6 C -0.130 4.130 7 N -0.546 5.546 8 Si 0.706 3.294 9 H -0.201 1.201 10 H -0.221 1.221 11 H -0.193 1.193 12 C 0.050 3.950 13 C 0.315 3.685 14 O -0.372 6.372 15 O -0.345 6.345 16 C -0.167 4.167 17 C -0.195 4.195 18 C -0.083 4.083 19 N -0.280 5.280 20 H 0.060 0.940 21 H 0.037 0.963 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.257 0.743 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.033 1.311 12.958 13.025 hybrid contribution -0.330 -0.368 0.423 0.651 sum -0.297 0.943 13.382 13.418 Atomic orbital electron populations 1.22368 0.98365 1.02860 0.97829 1.19097 0.92013 0.95654 0.91315 0.93457 1.20795 1.41902 0.94897 0.94715 0.91251 1.24969 0.94740 0.97909 0.95338 1.69905 1.47461 1.35515 1.01678 0.86864 0.78913 0.87033 0.76559 1.20102 1.22101 1.19305 1.21943 0.88867 0.85644 0.98553 1.24206 0.80158 0.89454 0.74663 1.90630 1.28192 1.80884 1.37516 1.84502 1.59306 1.21667 1.69018 1.22959 0.97806 1.02155 0.93809 1.23239 0.96231 1.01824 0.98171 1.22931 0.96545 1.00188 0.88635 1.61680 1.05891 1.25077 1.35374 0.94017 0.96277 0.90641 0.92983 0.74273 0.89539 0.91292 0.91383 0.90957 0.91741 0.90721 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.63 37.16 0.32 -3.20 16 2 C 0.04 0.92 1.37 -91.77 -0.13 0.80 16 3 H 0.05 1.15 5.30 -51.93 -0.28 0.88 16 4 C -0.49 -13.86 7.92 -34.44 -0.27 -14.14 16 5 H 0.07 2.20 6.69 -52.49 -0.35 1.85 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 8 Si 0.88 22.36 26.99 -169.99 -4.59 17.77 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.50 6.78 56.52 0.38 -6.12 16 12 C 0.14 2.83 0.64 -131.77 -0.08 2.75 16 13 C 0.48 9.51 5.84 36.00 0.21 9.72 16 14 O -0.49 -11.27 13.46 -18.75 -0.25 -11.53 16 15 O -0.53 -8.34 12.36 -39.25 -0.49 -8.83 16 16 C -0.13 -2.06 4.74 -24.77 -0.12 -2.17 16 17 C -0.16 -2.05 7.08 -24.45 -0.17 -2.22 16 18 C 0.05 0.68 7.58 -2.30 -0.02 0.66 16 19 N -0.65 -12.31 6.74 -98.30 -0.66 -12.98 16 20 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 21 H 0.02 0.36 6.52 -51.93 -0.34 0.02 16 22 H 0.07 1.81 5.60 -51.93 -0.29 1.52 16 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.40 4.53 9.10 45.56 0.41 4.95 16 25 H 0.09 1.36 7.35 -51.93 -0.38 0.98 16 26 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.35 6.39 7.44 -39.29 -0.29 6.10 16 LS Contribution 248.57 15.07 3.75 3.75 Total: -1.00 -33.43 248.57 -5.01 -38.44 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.19 Total: 6.99 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.36 Total: -5.81 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.11 Total: -40.78 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.74 Total: -20.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.59 Total: 17.77 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.43 -5.01 -38.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707965273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.597 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds