Wall clock time and date at job start Mon Mar 30 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46761 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00142 * 2 1 3 5 5 H 1.07989 * 120.00097 * 274.92537 * 4 2 1 6 6 C 1.37877 * 119.99950 * 94.92798 * 4 2 1 7 7 N 1.31512 * 120.00507 * 184.77918 * 6 4 2 8 8 Si 1.86807 * 119.99858 * 4.77868 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.85377 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.85003 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.85316 * 8 6 4 12 12 C 1.53001 * 109.47325 * 120.00037 * 2 1 3 13 13 C 1.50699 * 109.87864 * 65.70430 * 12 2 1 14 14 O 1.20823 * 120.00122 * 334.99772 * 13 12 2 15 15 O 1.34225 * 120.00066 * 154.99906 * 13 12 2 16 16 C 1.54314 * 109.88809 * 304.67288 * 12 2 1 17 17 C 1.55398 * 102.89940 * 218.40916 * 16 12 2 18 18 C 1.54908 * 101.74394 * 35.47919 * 17 16 12 19 19 N 1.47439 * 109.89036 * 186.73371 * 12 2 1 20 20 H 1.08991 * 109.47401 * 52.52213 * 1 2 3 21 21 H 1.09001 * 109.47555 * 292.51397 * 1 2 3 22 22 H 1.09003 * 109.46806 * 172.51608 * 1 2 3 23 23 H 0.96994 * 120.00655 * 179.97438 * 7 6 4 24 24 H 0.96707 * 117.00190 * 179.97438 * 15 13 12 25 25 H 1.09001 * 110.70751 * 336.69209 * 16 12 2 26 26 H 1.08998 * 110.71011 * 99.92959 * 16 12 2 27 27 H 1.09005 * 110.86925 * 277.39496 * 17 16 12 28 28 H 1.08994 * 111.06242 * 153.64948 * 17 16 12 29 29 H 1.08996 * 110.37354 * 204.19520 * 18 17 16 30 30 H 1.08996 * 110.37647 * 81.84849 * 18 17 16 31 31 H 1.00902 * 111.00420 * 240.68875 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1366 -1.7852 -1.2287 6 6 2.3588 0.0120 -2.3586 7 7 2.7071 -0.6131 -3.4619 8 14 2.3065 1.8789 -2.3197 9 1 3.5904 2.3991 -1.7846 10 1 2.0976 2.3970 -3.6957 11 1 1.1900 2.3249 -1.4481 12 6 2.0400 -0.7213 1.2492 13 6 1.6611 -2.1786 1.1901 14 8 0.7068 -2.5287 0.5370 15 8 2.3838 -3.0878 1.8630 16 6 1.4367 -0.0728 2.5129 17 6 2.6195 -0.1098 3.5202 18 6 3.8337 0.1352 2.5899 19 7 3.5054 -0.5874 1.3426 20 1 -0.3634 0.6252 -0.8155 21 1 -0.3634 0.3935 0.9493 22 1 -0.3633 -1.0190 -0.1339 23 1 2.9364 -0.1050 -4.2556 24 1 2.1019 -4.0104 1.7950 25 1 1.1345 0.9550 2.3118 26 1 0.5946 -0.6581 2.8819 27 1 2.6880 -1.0847 4.0030 28 1 2.5284 0.6848 4.2607 29 1 4.7415 -0.2709 3.0360 30 1 3.9510 1.2005 2.3917 31 1 3.9533 -1.4913 1.3196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707965273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:19 Heat of formation + Delta-G solvation = -113.759572 kcal Electronic energy + Delta-G solvation = -15377.686066 eV Core-core repulsion = 12850.888398 eV Total energy + Delta-G solvation = -2526.797667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80906 -39.03189 -37.23271 -35.39654 -33.34630 -31.10273 -29.30108 -27.10210 -24.46743 -23.29690 -22.02296 -20.35117 -19.25220 -18.70631 -17.92742 -16.84595 -16.39265 -15.66825 -15.40900 -14.94917 -14.55497 -14.27068 -14.23238 -13.56387 -13.16122 -12.93730 -12.79333 -12.62081 -12.36360 -12.30030 -11.92518 -11.77365 -11.69565 -11.55457 -11.16049 -10.71051 -10.53435 -9.26325 -8.16476 -6.15527 1.34390 1.38982 1.42068 1.50316 2.17267 2.44619 3.19145 3.37842 3.74302 3.81742 4.11194 4.28726 4.60669 4.72855 4.77413 4.78580 4.89407 4.95539 4.99518 5.11877 5.14140 5.36391 5.38692 5.55397 5.76400 5.90254 6.12259 6.39782 6.53761 6.85949 7.13548 7.46362 9.01481 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.013777 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.136445 B = 2031.916561 C = 2307.013018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.034 3.966 3 H 0.047 0.953 4 C -0.475 4.475 5 H 0.023 0.977 6 C 0.004 3.996 7 N -0.961 5.961 8 Si 0.943 3.057 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.245 1.245 12 C 0.136 3.864 13 C 0.476 3.524 14 O -0.530 6.530 15 O -0.516 6.516 16 C -0.127 4.127 17 C -0.140 4.140 18 C 0.043 3.957 19 N -0.676 5.676 20 H 0.030 0.970 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.260 0.740 24 H 0.420 0.580 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 2.005 16.530 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.041 0.959 6 C -0.191 4.191 7 N -0.603 5.603 8 Si 0.768 3.232 9 H -0.191 1.191 10 H -0.224 1.224 11 H -0.169 1.169 12 C 0.043 3.957 13 C 0.318 3.682 14 O -0.418 6.418 15 O -0.330 6.330 16 C -0.166 4.166 17 C -0.178 4.178 18 C -0.085 4.085 19 N -0.307 5.307 20 H 0.050 0.950 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.281 0.719 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.090 2.885 15.776 16.038 hybrid contribution -0.302 -1.012 -0.401 1.129 sum -0.212 1.873 15.375 15.491 Atomic orbital electron populations 1.22235 0.97396 1.01744 0.99530 1.19077 0.92754 0.95456 0.91245 0.93472 1.21015 1.40575 0.93023 0.96723 0.95894 1.25880 0.94972 1.03289 0.94915 1.70077 1.49985 1.37561 1.02641 0.85807 0.79938 0.80649 0.76777 1.19105 1.22355 1.16911 1.21748 0.89897 0.85502 0.98540 1.24319 0.79572 0.90318 0.74016 1.90623 1.30105 1.81670 1.39354 1.84425 1.58097 1.22789 1.67689 1.22981 0.99071 1.02047 0.92472 1.23180 0.93529 1.03490 0.97626 1.23066 0.98307 0.99799 0.87369 1.61595 1.05236 1.25314 1.38522 0.95035 0.92401 0.92603 0.93137 0.71921 0.88916 0.90449 0.90580 0.87850 0.89452 0.90593 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.64 8.63 71.98 0.62 -6.02 16 2 C 0.03 1.60 1.37 -11.54 -0.02 1.58 16 3 H 0.05 2.20 5.30 -2.39 -0.01 2.19 16 4 C -0.48 -27.75 7.92 25.60 0.20 -27.55 16 5 H 0.02 1.52 6.69 -2.92 -0.02 1.50 16 6 C 0.00 0.25 5.47 84.66 0.46 0.71 16 7 N -0.96 -62.73 13.96 21.45 0.30 -62.43 16 8 Si 0.94 46.17 26.99 68.60 1.85 48.02 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 11 H -0.25 -11.00 6.78 99.48 0.67 -10.32 16 12 C 0.14 5.17 0.64 3.12 0.00 5.17 16 13 C 0.48 18.74 5.84 71.24 0.42 19.16 16 14 O -0.53 -24.81 13.46 21.97 0.30 -24.51 16 15 O -0.52 -15.39 12.36 -51.37 -0.64 -16.03 16 16 C -0.13 -3.60 4.74 31.86 0.15 -3.45 16 17 C -0.14 -3.02 7.08 32.07 0.23 -2.79 16 18 C 0.04 1.11 7.58 86.77 0.66 1.76 16 19 N -0.68 -24.41 6.74 -464.90 -3.14 -27.54 16 20 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 21 H 0.06 2.06 6.52 -2.39 -0.02 2.04 16 22 H 0.06 2.68 5.60 -2.39 -0.01 2.67 16 23 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 24 H 0.42 8.90 9.10 -74.05 -0.67 8.23 16 25 H 0.09 2.51 7.35 -2.39 -0.02 2.50 16 26 H 0.08 2.07 7.82 -2.39 -0.02 2.05 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.34 12.32 7.44 -89.69 -0.67 11.65 16 Total: -1.00 -74.71 248.57 1.18 -73.53 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.22 Total: 20.37 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 2.72 Total: -11.42 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.84 Total: -89.97 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.34 Total: -40.54 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.85 Total: 48.02 kcal Total: -74.71 1.18 -73.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707965273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.230 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds