Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00379 * 2 1 4 4 H 1.09002 * 115.55883 * 4.31417 * 3 2 1 5 5 C 1.53000 * 117.50175 * 218.62465 * 3 2 1 6 6 C 1.52997 * 117.50070 * 149.99825 * 3 2 1 7 7 H 1.08994 * 117.52228 * 214.97146 * 6 3 2 8 8 C 1.50700 * 117.49686 * 0.02562 * 6 3 2 9 9 O 1.21276 * 120.00205 * 0.02562 * 8 6 3 10 10 N 1.34783 * 119.99744 * 180.02562 * 8 6 3 11 11 C 1.46494 * 120.00361 * 359.97438 * 10 8 6 12 12 C 1.46504 * 119.99867 * 179.97438 * 10 8 6 13 13 C 1.50703 * 109.47029 * 90.00097 * 12 10 8 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47195 * 299.99798 * 1 2 3 23 23 H 1.08996 * 109.47408 * 59.99358 * 1 2 3 24 24 H 1.08993 * 117.49992 * 145.02145 * 5 3 2 25 25 H 1.09002 * 117.51504 * 359.97438 * 5 3 2 26 26 H 1.08999 * 109.47231 * 270.00342 * 11 10 8 27 27 H 1.09006 * 109.46659 * 30.00034 * 11 10 8 28 28 H 1.09001 * 109.47600 * 150.00031 * 11 10 8 29 29 H 1.09003 * 109.46930 * 330.00362 * 12 10 8 30 30 H 1.08996 * 109.47301 * 209.99930 * 12 10 8 31 31 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3058 2.1339 0.0740 5 6 3.2662 1.5195 -0.8471 6 6 3.3713 1.4727 0.6786 7 1 3.5627 2.4111 1.1989 8 6 3.9965 0.2480 1.2953 9 8 3.4218 -0.8186 1.2416 10 7 5.1944 0.3381 1.9065 11 6 5.8888 1.6264 1.9709 12 6 5.8019 -0.8523 2.5066 13 6 6.6597 -1.5491 1.4820 14 1 6.7436 -1.1459 0.4836 15 6 7.3367 -2.7021 1.8189 16 7 7.2342 -3.1935 3.0345 17 14 8.4005 -3.5654 0.5491 18 1 7.5809 -4.5588 -0.1904 19 1 9.5219 -4.2591 1.2321 20 1 8.9444 -2.5647 -0.4038 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 3.3881 2.4888 -1.3304 25 1 3.6496 0.6647 -1.4043 26 1 6.5308 1.7371 1.0970 27 1 5.1564 2.4335 1.9883 28 1 6.4960 1.6671 2.8753 29 1 5.0174 -1.5294 2.8447 30 1 6.4179 -0.5570 3.3559 31 1 6.6820 -2.7449 3.6939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709694223.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -45.630081 kcal Electronic energy + Delta-G solvation = -14446.267651 eV Core-core repulsion = 11922.424300 eV Total energy + Delta-G solvation = -2523.843351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.45124 -37.52591 -34.88764 -34.44514 -32.68788 -27.65914 -26.50811 -25.79127 -23.92757 -22.16138 -21.73722 -18.45257 -17.26780 -16.78677 -15.73131 -15.39402 -14.79815 -14.53083 -14.21333 -13.66096 -13.41250 -12.82665 -12.28939 -12.21239 -12.01946 -11.67359 -11.43121 -11.16602 -11.15616 -10.81534 -10.51895 -10.25800 -10.07477 -9.04563 -9.03136 -8.70654 -8.31884 -7.49030 -6.32290 -4.03296 3.24151 3.47468 3.51908 3.66338 3.73199 3.90651 4.21840 4.58859 4.85788 4.99164 5.13539 5.29165 5.40187 5.43269 5.45885 5.52462 5.72110 5.76597 5.78297 5.97943 6.15495 6.21787 6.88831 7.20700 7.41056 7.53141 8.11971 8.41818 8.52038 8.85229 9.20990 9.66428 11.05060 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.008123 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.335481 B = 3446.186644 C = 3679.774313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.043 3.957 4 H 0.113 0.887 5 C -0.162 4.162 6 C -0.193 4.193 7 H 0.122 0.878 8 C 0.531 3.469 9 O -0.516 6.516 10 N -0.602 5.602 11 C 0.090 3.910 12 C 0.236 3.764 13 C -0.603 4.603 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 1.075 2.925 18 H -0.287 1.287 19 H -0.284 1.284 20 H -0.289 1.289 21 H 0.086 0.914 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.020 0.980 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 12.796 -5.238 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C -0.016 4.016 4 H 0.130 0.870 5 C -0.200 4.200 6 C -0.214 4.214 7 H 0.140 0.860 8 C 0.316 3.684 9 O -0.391 6.391 10 N -0.335 5.335 11 C -0.054 4.054 12 C 0.117 3.883 13 C -0.642 4.642 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.548 5.548 17 Si 0.903 3.097 18 H -0.214 1.214 19 H -0.209 1.209 20 H -0.216 1.216 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.924 10.717 -5.473 14.409 hybrid contribution -1.016 1.747 0.257 2.037 sum -8.940 12.464 -5.216 16.202 Atomic orbital electron populations 1.22799 0.81790 1.02839 0.99244 1.88248 1.18573 1.23476 1.93560 1.22585 0.88971 0.87394 1.02660 0.86970 1.23370 1.01268 1.03735 0.91591 1.22889 1.01666 0.99879 0.96972 0.85993 1.19253 0.81286 0.88535 0.79292 1.90718 1.62001 1.29073 1.57277 1.47903 1.18776 1.10397 1.56378 1.21588 0.96760 0.85245 1.01843 1.19323 0.93100 0.82393 0.93519 1.22292 1.30752 1.12269 0.98868 0.93101 1.25815 0.97913 0.94949 0.99912 1.70768 1.38874 1.41394 1.03811 0.83470 0.76070 0.75708 0.74476 1.21366 1.20932 1.21569 0.89543 0.94291 0.94431 0.87608 0.87609 0.93308 0.92570 0.91797 0.94939 0.96215 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.88 101.05 1.10 1.48 16 2 O -0.32 -5.78 8.84 -57.36 -0.51 -6.29 16 3 C 0.04 0.63 6.40 -26.73 -0.17 0.46 16 4 H 0.11 1.18 7.93 -51.93 -0.41 0.77 16 5 C -0.16 -2.29 10.18 -26.73 -0.27 -2.56 16 6 C -0.19 -3.12 5.29 -91.77 -0.49 -3.60 16 7 H 0.12 1.55 6.44 -51.93 -0.33 1.22 16 8 C 0.53 12.05 7.46 -10.98 -0.08 11.96 16 9 O -0.52 -14.12 14.50 -16.57 -0.24 -14.36 16 10 N -0.60 -13.75 2.86 -182.95 -0.52 -14.27 16 11 C 0.09 1.53 10.31 59.84 0.62 2.14 16 12 C 0.24 6.50 4.52 -5.19 -0.02 6.48 16 13 C -0.60 -18.11 9.39 -34.44 -0.32 -18.43 16 14 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 15 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 16 N -0.91 -28.73 13.65 55.43 0.76 -27.97 16 17 Si 1.07 26.57 29.90 -169.99 -5.08 21.48 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 28 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.03 0.99 7.29 -51.93 -0.38 0.61 16 30 H 0.02 0.54 7.76 -51.93 -0.40 0.14 16 31 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -36.84 268.14 -5.58 -42.42 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.29 Total: -3.42 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.26 Total: -1.63 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.23 Total: -42.25 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.75 Total: -20.65 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -36.84 -5.58 -42.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709694223.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.215 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds