Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00379 * 2 1 4 4 H 1.09002 * 115.55883 * 4.31417 * 3 2 1 5 5 C 1.53000 * 117.50175 * 218.62465 * 3 2 1 6 6 C 1.52997 * 117.50070 * 149.99825 * 3 2 1 7 7 H 1.08994 * 117.52228 * 214.97146 * 6 3 2 8 8 C 1.50700 * 117.49686 * 0.02562 * 6 3 2 9 9 O 1.21276 * 120.00205 * 0.02562 * 8 6 3 10 10 N 1.34783 * 119.99744 * 180.02562 * 8 6 3 11 11 C 1.46494 * 120.00361 * 359.97438 * 10 8 6 12 12 C 1.46504 * 119.99867 * 179.97438 * 10 8 6 13 13 C 1.50703 * 109.47029 * 90.00097 * 12 10 8 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47195 * 299.99798 * 1 2 3 23 23 H 1.08996 * 109.47408 * 59.99358 * 1 2 3 24 24 H 1.08993 * 117.49992 * 145.02145 * 5 3 2 25 25 H 1.09002 * 117.51504 * 359.97438 * 5 3 2 26 26 H 1.08999 * 109.47231 * 270.00342 * 11 10 8 27 27 H 1.09006 * 109.46659 * 30.00034 * 11 10 8 28 28 H 1.09001 * 109.47600 * 150.00031 * 11 10 8 29 29 H 1.09003 * 109.46930 * 330.00362 * 12 10 8 30 30 H 1.08996 * 109.47301 * 209.99930 * 12 10 8 31 31 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3058 2.1339 0.0740 5 6 3.2662 1.5195 -0.8471 6 6 3.3713 1.4727 0.6786 7 1 3.5627 2.4111 1.1989 8 6 3.9965 0.2480 1.2953 9 8 3.4218 -0.8186 1.2416 10 7 5.1944 0.3381 1.9065 11 6 5.8888 1.6264 1.9709 12 6 5.8019 -0.8523 2.5066 13 6 6.6597 -1.5491 1.4820 14 1 6.7436 -1.1459 0.4836 15 6 7.3367 -2.7021 1.8189 16 7 7.2342 -3.1935 3.0345 17 14 8.4005 -3.5654 0.5491 18 1 7.5809 -4.5588 -0.1904 19 1 9.5219 -4.2591 1.2321 20 1 8.9444 -2.5647 -0.4038 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 3.3881 2.4888 -1.3304 25 1 3.6496 0.6647 -1.4043 26 1 6.5308 1.7371 1.0970 27 1 5.1564 2.4335 1.9883 28 1 6.4960 1.6671 2.8753 29 1 5.0174 -1.5294 2.8447 30 1 6.4179 -0.5570 3.3559 31 1 6.6820 -2.7449 3.6939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709694223.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -72.091961 kcal Electronic energy + Delta-G solvation = -14447.415124 eV Core-core repulsion = 11922.424300 eV Total energy + Delta-G solvation = -2524.990824 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99108 -38.90005 -36.70133 -35.80591 -34.86516 -29.67824 -27.56331 -27.32601 -25.88802 -23.77552 -22.98064 -20.05281 -19.06893 -18.58476 -17.28719 -16.75837 -16.22647 -16.01221 -15.75657 -15.57013 -14.72693 -14.53958 -13.93774 -13.82169 -13.58545 -13.29477 -13.23447 -12.81621 -12.53105 -12.30709 -12.19756 -11.95469 -11.41307 -11.20682 -10.65184 -10.57007 -10.06759 -9.43915 -8.72327 -6.48307 1.46206 1.56435 1.68825 1.74783 2.26549 2.51560 2.73719 2.92967 3.06620 3.68131 3.83303 3.97634 4.15050 4.31889 4.45908 4.55423 4.57686 4.64416 4.72314 4.79379 4.83889 4.88030 4.91922 5.05668 5.57190 5.79863 6.11875 6.40088 6.41920 6.72504 7.28363 7.49352 8.61765 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.008123 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.335481 B = 3446.186644 C = 3679.774313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.045 3.955 4 H 0.164 0.836 5 C -0.149 4.149 6 C -0.204 4.204 7 H 0.167 0.833 8 C 0.515 3.485 9 O -0.579 6.579 10 N -0.611 5.611 11 C 0.084 3.916 12 C 0.246 3.754 13 C -0.617 4.617 14 H 0.042 0.958 15 C -0.034 4.034 16 N -0.931 5.931 17 Si 1.122 2.878 18 H -0.281 1.281 19 H -0.271 1.271 20 H -0.266 1.266 21 H 0.079 0.921 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.158 0.842 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.067 0.933 29 H -0.012 1.012 30 H 0.019 0.981 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 15.408 -6.705 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C -0.014 4.014 4 H 0.181 0.819 5 C -0.186 4.186 6 C -0.225 4.225 7 H 0.184 0.816 8 C 0.304 3.696 9 O -0.459 6.459 10 N -0.343 5.343 11 C -0.058 4.058 12 C 0.124 3.876 13 C -0.655 4.655 14 H 0.060 0.940 15 C -0.231 4.231 16 N -0.568 5.568 17 Si 0.943 3.057 18 H -0.207 1.207 19 H -0.196 1.196 20 H -0.191 1.191 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.175 0.825 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.037 0.963 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.085 13.397 -6.934 17.115 hybrid contribution -1.028 0.951 0.741 1.584 sum -9.113 14.348 -6.193 18.090 Atomic orbital electron populations 1.22983 0.79551 1.03245 1.01315 1.88185 1.21375 1.26171 1.93772 1.23103 0.89345 0.87596 1.01359 0.81909 1.23493 1.00556 1.04845 0.89737 1.22905 1.03239 0.98001 0.98367 0.81597 1.20500 0.80665 0.90135 0.78278 1.90676 1.63543 1.32173 1.59483 1.48022 1.19410 1.10895 1.56003 1.21905 0.97981 0.83626 1.02274 1.18866 0.91448 0.83984 0.93338 1.22566 1.31162 1.12926 0.98877 0.93993 1.27444 0.98911 0.95784 1.00996 1.70895 1.39575 1.41787 1.04535 0.82892 0.74884 0.75402 0.72570 1.20731 1.19628 1.19114 0.90236 0.92862 0.91491 0.82453 0.91237 0.92821 0.87718 0.91401 0.99362 0.96277 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.88 113.37 1.23 1.83 16 2 O -0.38 -13.35 8.84 -127.82 -1.13 -14.48 16 3 C 0.04 1.16 6.40 30.59 0.20 1.36 16 4 H 0.16 2.51 7.93 -2.39 -0.02 2.49 16 5 C -0.15 -3.73 10.18 30.60 0.31 -3.42 16 6 C -0.20 -6.04 5.29 -11.54 -0.06 -6.10 16 7 H 0.17 3.32 6.44 -2.39 -0.02 3.30 16 8 C 0.52 23.58 7.46 87.66 0.65 24.24 16 9 O -0.58 -33.23 14.50 18.14 0.26 -32.97 16 10 N -0.61 -28.14 2.86 -851.12 -2.43 -30.57 16 11 C 0.08 2.68 10.31 127.77 1.32 4.00 16 12 C 0.25 14.09 4.52 85.63 0.39 14.47 16 13 C -0.62 -38.07 9.39 25.60 0.24 -37.83 16 14 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 15 C -0.03 -2.05 5.46 84.65 0.46 -1.59 16 16 N -0.93 -60.21 13.65 21.45 0.29 -59.92 16 17 Si 1.12 53.45 29.90 68.60 2.05 55.50 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.10 2.30 5.99 -2.38 -0.01 2.28 16 28 H 0.07 2.09 7.89 -2.39 -0.02 2.07 16 29 H -0.01 -0.76 7.29 -2.39 -0.02 -0.78 16 30 H 0.02 1.09 7.76 -2.39 -0.02 1.07 16 31 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 Total: -1.00 -86.10 268.14 4.99 -81.11 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.21 Total: 4.38 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.74 Total: -3.05 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -2.14 Total: -90.49 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.87 Total: -47.45 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 2.05 Total: 55.50 kcal Total: -86.10 4.99 -81.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709694223.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.017 kcal (2) G-P(sol) polarization free energy of solvation -86.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds