Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00242 * 2 1 4 4 H 1.09005 * 115.55625 * 355.69144 * 3 2 1 5 5 C 1.53070 * 117.49563 * 141.40002 * 3 2 1 6 6 C 1.52996 * 117.50077 * 210.00495 * 3 2 1 7 7 H 1.09002 * 117.50011 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50109 * 145.01787 * 6 3 2 9 9 O 1.21279 * 119.99620 * 359.91515 * 8 6 3 10 10 N 1.34771 * 120.00343 * 179.90987 * 8 6 3 11 11 C 1.46505 * 119.99877 * 0.02562 * 10 8 6 12 12 C 1.46499 * 120.00531 * 179.97438 * 10 8 6 13 13 C 1.50701 * 109.47260 * 270.00758 * 12 10 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 10 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 12 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 H 1.09005 * 109.47082 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47150 * 299.99874 * 1 2 3 23 23 H 1.08991 * 109.47514 * 59.99833 * 1 2 3 24 24 H 1.08997 * 117.49627 * 0.02562 * 5 3 2 25 25 H 1.09005 * 117.53586 * 214.95401 * 5 3 2 26 26 H 1.08998 * 109.46961 * 269.99982 * 11 10 8 27 27 H 1.08997 * 109.47067 * 29.99430 * 11 10 8 28 28 H 1.08998 * 109.47093 * 149.99718 * 11 10 8 29 29 H 1.09000 * 109.47197 * 149.99763 * 12 10 8 30 30 H 1.09007 * 109.46342 * 30.00336 * 12 10 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1339 -0.0739 5 6 3.2671 1.5194 0.8471 6 6 3.3712 1.4728 -0.6786 7 1 3.8231 0.5872 -1.1255 8 6 3.6352 2.7704 -1.3981 9 8 2.7833 3.6332 -1.4246 10 7 4.8180 2.9722 -2.0119 11 6 5.8469 1.9297 -1.9801 12 6 5.0744 4.2333 -2.7117 13 6 4.6363 4.1088 -4.1482 14 1 4.2098 3.1827 -4.5044 15 6 4.7856 5.1752 -5.0093 16 7 5.3052 6.3029 -4.5757 17 14 4.2497 5.0183 -6.7919 18 1 2.7974 4.7131 -6.8472 19 1 4.5141 6.2952 -7.5025 20 1 5.0110 3.9222 -7.4431 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.6503 0.6642 1.4037 25 1 3.3900 2.4886 1.3306 26 1 6.4827 2.0733 -1.1065 27 1 5.3707 0.9508 -1.9259 28 1 6.4527 1.9896 -2.8843 29 1 6.1402 4.4590 -2.6750 30 1 4.5162 5.0362 -2.2299 31 1 5.4105 7.0529 -5.1817 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709694225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -48.648226 kcal Electronic energy + Delta-G solvation = -14186.266303 eV Core-core repulsion = 11662.292075 eV Total energy + Delta-G solvation = -2523.974228 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49876 -37.77178 -34.96979 -34.42699 -32.54418 -28.04602 -26.72051 -25.85218 -24.20089 -22.11037 -21.61545 -18.37409 -17.30306 -16.48384 -15.80031 -15.55112 -15.05348 -14.81993 -14.41250 -14.04035 -13.08656 -12.88418 -12.30808 -12.10440 -12.06976 -11.73237 -11.42039 -11.31465 -11.14639 -10.89193 -10.55719 -10.35956 -10.14633 -9.63454 -9.22620 -8.85869 -8.42512 -7.63293 -6.03491 -4.08403 3.13464 3.32838 3.36839 3.40616 3.43786 4.03178 4.20376 4.46987 4.93867 5.02692 5.14874 5.28584 5.34084 5.36064 5.41951 5.57937 5.64097 5.75708 5.86185 5.98517 6.09891 6.28834 7.06329 7.18447 7.44048 7.54804 7.92844 8.24017 8.42523 8.90300 9.09630 9.56633 11.04578 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039179 B = 0.007236 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.490991 B = 3868.820086 C = 4190.995711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.044 3.956 4 H 0.124 0.876 5 C -0.158 4.158 6 C -0.187 4.187 7 H 0.125 0.875 8 C 0.534 3.466 9 O -0.545 6.545 10 N -0.596 5.596 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -11.274 8.848 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C -0.014 4.014 4 H 0.142 0.858 5 C -0.196 4.196 6 C -0.209 4.209 7 H 0.143 0.857 8 C 0.320 3.680 9 O -0.424 6.424 10 N -0.327 5.327 11 C -0.060 4.060 12 C 0.126 3.874 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.104 0.896 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.572 -10.776 8.749 14.333 hybrid contribution -0.270 0.042 -1.152 1.184 sum -3.843 -10.734 7.596 13.700 Atomic orbital electron populations 1.22812 0.80414 1.02619 1.00542 1.87765 1.20248 1.25856 1.94104 1.22706 0.89862 0.86382 1.02453 0.85810 1.23391 1.00946 1.03751 0.91484 1.22811 1.02574 0.99363 0.96131 0.85689 1.19311 0.82488 0.86896 0.79278 1.90650 1.44580 1.45428 1.61712 1.48068 1.13666 1.18967 1.52048 1.21666 0.91807 0.90741 1.01798 1.19315 0.96894 0.79870 0.91366 1.21408 1.41436 0.99190 0.94586 0.92490 1.24935 0.95122 0.95021 0.99021 1.69922 1.44602 1.03057 1.35870 0.86548 0.79284 0.77246 0.84281 1.20184 1.21134 1.20223 0.89570 0.93772 0.93478 0.87623 0.87664 0.93642 0.92262 0.90838 0.94867 0.93814 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.88 101.05 1.10 1.45 16 2 O -0.36 -5.14 10.96 -35.23 -0.39 -5.52 16 3 C 0.04 0.67 5.96 -26.70 -0.16 0.52 16 4 H 0.12 1.97 7.45 -51.93 -0.39 1.58 16 5 C -0.16 -2.14 10.19 -26.69 -0.27 -2.41 16 6 C -0.19 -3.09 5.23 -91.77 -0.48 -3.57 16 7 H 0.13 1.87 6.44 -51.93 -0.33 1.53 16 8 C 0.53 11.62 7.46 -10.99 -0.08 11.54 16 9 O -0.55 -14.06 15.84 5.56 0.09 -13.97 16 10 N -0.60 -13.17 2.86 -182.95 -0.52 -13.70 16 11 C 0.08 1.39 10.27 59.85 0.61 2.01 16 12 C 0.24 6.56 5.16 -5.19 -0.03 6.53 16 13 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 17 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.83 6.00 -51.93 -0.31 0.52 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 272.21 15.07 4.10 4.10 Total: -1.00 -33.48 272.21 -5.07 -38.55 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.34 Total: -2.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 0.27 Total: 2.12 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.21 Total: -39.87 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.30 Total: -19.50 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.48 -5.07 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709694225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.099 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds