Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.52999 * 109.47521 * 120.00435 * 2 1 3 5 5 C 1.50699 * 109.47261 * 184.99965 * 4 2 1 6 6 H 1.07998 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00177 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99985 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47277 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47158 * 119.99606 * 9 7 5 12 12 H 1.48495 * 109.47379 * 239.99583 * 9 7 5 13 13 N 1.46900 * 109.46864 * 240.00162 * 2 1 3 14 14 C 1.46900 * 110.99896 * 81.84657 * 13 2 1 15 15 C 1.50698 * 115.55314 * 65.92850 * 14 13 2 16 16 O 1.20827 * 119.99933 * 176.65356 * 15 14 13 17 17 O 1.34229 * 119.99781 * 356.65006 * 15 14 13 18 18 C 1.53005 * 117.49776 * 280.25605 * 14 13 2 19 19 C 1.53006 * 117.49878 * 211.60023 * 14 13 2 20 20 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46600 * 299.99902 * 1 2 3 22 22 H 1.08993 * 109.47309 * 59.99919 * 1 2 3 23 23 H 1.09008 * 109.46929 * 304.99609 * 4 2 1 24 24 H 1.09002 * 109.47170 * 64.99261 * 4 2 1 25 25 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 26 26 H 1.00907 * 111.00293 * 317.89293 * 13 2 1 27 27 H 0.96696 * 117.00363 * 179.97438 * 17 15 14 28 28 H 1.08999 * 117.49999 * 0.02562 * 18 14 13 29 29 H 1.09003 * 117.49833 * 145.02470 * 18 14 13 30 30 H 1.08996 * 117.50072 * 214.97921 * 19 14 13 31 31 H 1.09001 * 117.49461 * 359.97341 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3126 6 1 4.0791 -0.0862 0.5390 7 6 4.2306 -1.1937 2.3576 8 7 3.5767 -1.8380 3.2993 9 14 6.0923 -1.0624 2.4358 10 1 6.5840 -0.2929 1.2648 11 1 6.4874 -0.3669 3.6871 12 1 6.6857 -2.4236 2.4176 13 7 2.0196 -0.6925 -1.1995 14 6 2.0117 0.2027 -2.3642 15 6 2.9676 1.3657 -2.2967 16 8 3.0710 2.1180 -3.2365 17 8 3.7041 1.5659 -1.1925 18 6 0.6747 0.4274 -3.0734 19 6 1.7593 -0.4255 -3.7363 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6056 -0.2618 2.1370 24 1 1.7517 -1.7716 1.2055 25 1 4.0611 -2.2448 4.0346 26 1 1.4813 -1.5264 -1.3807 27 1 4.3034 2.3247 -1.1960 28 1 -0.1991 -0.0887 -2.6755 29 1 0.4867 1.4163 -3.4915 30 1 2.2843 0.0026 -4.5902 31 1 1.5995 -1.5031 -3.7747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709958622.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -68.428350 kcal Electronic energy + Delta-G solvation = -14740.462580 eV Core-core repulsion = 12215.630622 eV Total energy + Delta-G solvation = -2524.831958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30115 -37.71780 -35.95703 -34.49350 -32.20082 -28.89057 -27.26465 -24.77352 -23.04024 -22.47928 -19.97154 -19.62288 -17.84589 -16.43257 -16.12700 -15.18169 -15.16345 -14.38875 -14.08286 -13.88122 -12.90835 -12.72211 -12.33701 -11.80795 -11.70643 -11.46230 -11.23395 -11.17935 -10.94092 -10.74703 -10.52831 -10.29627 -10.16098 -9.95306 -9.15306 -8.86133 -8.19732 -7.72143 -5.81188 -3.76863 2.31264 3.27631 3.41938 3.49496 3.54838 3.90323 4.42444 4.62801 4.73805 4.91488 5.20844 5.56018 5.56651 5.75345 5.81173 5.82639 5.91540 6.01711 6.06084 6.46975 6.60575 6.81184 7.00985 7.43721 7.65139 7.93588 8.00746 8.21982 8.31818 8.68904 9.33345 9.84105 11.31516 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.010122 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.989064 B = 2765.707052 C = 3275.314426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.076 0.924 4 C 0.033 3.967 5 C -0.482 4.482 6 H 0.073 0.927 7 C 0.045 3.955 8 N -0.908 5.908 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.614 5.614 14 C 0.046 3.954 15 C 0.530 3.470 16 O -0.537 6.537 17 O -0.473 6.473 18 C -0.191 4.191 19 C -0.142 4.142 20 H 0.050 0.950 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.254 0.746 26 H 0.342 0.658 27 H 0.401 0.599 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 3.992 -10.621 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.094 0.906 4 C -0.004 4.004 5 C -0.520 4.520 6 H 0.092 0.908 7 C -0.153 4.153 8 N -0.550 5.550 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.244 5.244 14 C -0.049 4.049 15 C 0.374 3.626 16 O -0.427 6.427 17 O -0.281 6.281 18 C -0.231 4.231 19 C -0.180 4.180 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.161 0.839 27 H 0.258 0.742 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.443 3.860 -10.521 12.055 hybrid contribution 0.471 0.452 0.009 0.653 sum -3.972 4.311 -10.512 12.036 Atomic orbital electron populations 1.22721 0.99596 1.01262 1.01134 1.21914 0.89674 0.99084 0.91271 0.90620 1.19117 0.96696 0.95118 0.89471 1.21389 0.91738 1.32028 1.06876 0.90838 1.25032 0.97832 0.96224 0.96232 1.69982 1.34949 1.37556 1.12540 0.86591 0.86771 0.77419 0.77458 1.19825 1.21644 1.21556 1.60337 1.58879 1.05391 0.99751 1.20989 0.95687 0.95086 0.93156 1.21885 0.78104 0.83283 0.79345 1.90669 1.66676 1.46802 1.38598 1.84867 1.52175 1.51176 1.39846 1.23793 0.92798 1.02508 1.03979 1.23226 1.01322 1.00058 0.93349 0.93052 0.92361 0.93750 0.96354 0.96686 0.93591 0.83868 0.74157 0.87388 0.88112 0.87495 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 8.91 37.16 0.33 -2.71 16 2 C 0.09 1.75 2.19 -67.71 -0.15 1.60 16 3 H 0.08 1.56 6.05 -51.93 -0.31 1.25 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.34 8.84 -34.44 -0.30 -13.64 16 6 H 0.07 2.01 6.47 -52.49 -0.34 1.67 16 7 C 0.05 1.30 5.46 -17.82 -0.10 1.20 16 8 N -0.91 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.61 -11.05 5.98 -94.20 -0.56 -11.61 16 14 C 0.05 0.71 2.31 -132.75 -0.31 0.41 16 15 C 0.53 9.10 7.64 36.00 0.28 9.38 16 16 O -0.54 -9.69 17.23 -18.75 -0.32 -10.01 16 17 O -0.47 -8.14 10.20 -39.25 -0.40 -8.54 16 18 C -0.19 -2.40 8.63 -26.69 -0.23 -2.63 16 19 C -0.14 -1.78 9.81 -26.69 -0.26 -2.04 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.62 5.55 -51.93 -0.29 0.33 16 23 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.34 5.56 8.40 -39.29 -0.33 5.23 16 27 H 0.40 4.94 9.10 45.56 0.41 5.35 16 28 H 0.11 1.22 6.81 -51.93 -0.35 0.87 16 29 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.11 1.32 7.99 -51.93 -0.42 0.91 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 263.50 15.07 3.97 3.97 Total: -1.00 -32.52 263.50 -5.77 -38.29 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.30 Total: 5.26 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.87 Total: -7.74 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.17 Total: -38.39 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.72 Total: -18.55 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.52 -5.77 -38.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709958622.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.140 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds