Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.52999 * 109.47521 * 120.00435 * 2 1 3 5 5 C 1.50699 * 109.47261 * 184.99965 * 4 2 1 6 6 H 1.07998 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00177 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99985 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47277 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47158 * 119.99606 * 9 7 5 12 12 H 1.48495 * 109.47379 * 239.99583 * 9 7 5 13 13 N 1.46900 * 109.46864 * 240.00162 * 2 1 3 14 14 C 1.46900 * 110.99896 * 81.84657 * 13 2 1 15 15 C 1.50698 * 115.55314 * 65.92850 * 14 13 2 16 16 O 1.20827 * 119.99933 * 176.65356 * 15 14 13 17 17 O 1.34229 * 119.99781 * 356.65006 * 15 14 13 18 18 C 1.53005 * 117.49776 * 280.25605 * 14 13 2 19 19 C 1.53006 * 117.49878 * 211.60023 * 14 13 2 20 20 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46600 * 299.99902 * 1 2 3 22 22 H 1.08993 * 109.47309 * 59.99919 * 1 2 3 23 23 H 1.09008 * 109.46929 * 304.99609 * 4 2 1 24 24 H 1.09002 * 109.47170 * 64.99261 * 4 2 1 25 25 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 26 26 H 1.00907 * 111.00293 * 317.89293 * 13 2 1 27 27 H 0.96696 * 117.00363 * 179.97438 * 17 15 14 28 28 H 1.08999 * 117.49999 * 0.02562 * 18 14 13 29 29 H 1.09003 * 117.49833 * 145.02470 * 18 14 13 30 30 H 1.08996 * 117.50072 * 214.97921 * 19 14 13 31 31 H 1.09001 * 117.49461 * 359.97341 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3126 6 1 4.0791 -0.0862 0.5390 7 6 4.2306 -1.1937 2.3576 8 7 3.5767 -1.8380 3.2993 9 14 6.0923 -1.0624 2.4358 10 1 6.5840 -0.2929 1.2648 11 1 6.4874 -0.3669 3.6871 12 1 6.6857 -2.4236 2.4176 13 7 2.0196 -0.6925 -1.1995 14 6 2.0117 0.2027 -2.3642 15 6 2.9676 1.3657 -2.2967 16 8 3.0710 2.1180 -3.2365 17 8 3.7041 1.5659 -1.1925 18 6 0.6747 0.4274 -3.0734 19 6 1.7593 -0.4255 -3.7363 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6056 -0.2618 2.1370 24 1 1.7517 -1.7716 1.2055 25 1 4.0611 -2.2448 4.0346 26 1 1.4813 -1.5264 -1.3807 27 1 4.3034 2.3247 -1.1960 28 1 -0.1991 -0.0887 -2.6755 29 1 0.4867 1.4163 -3.4915 30 1 2.2843 0.0026 -4.5902 31 1 1.5995 -1.5031 -3.7747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709958622.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -92.204138 kcal Electronic energy + Delta-G solvation = -14741.493576 eV Core-core repulsion = 12215.630622 eV Total energy + Delta-G solvation = -2525.862954 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.56829 -39.00392 -37.31774 -36.00857 -34.20888 -30.38537 -29.05495 -26.03106 -25.00077 -23.48331 -21.49265 -20.98812 -19.18090 -18.25380 -17.65875 -16.64875 -16.46304 -16.22947 -15.46983 -15.13315 -14.52424 -14.21454 -13.82034 -13.46619 -13.18398 -13.04819 -12.65453 -12.58126 -12.39871 -12.33764 -12.12464 -11.89565 -11.66718 -11.46854 -10.94062 -10.85644 -10.41409 -9.05646 -8.01311 -6.02814 1.06509 1.43822 1.45592 1.58173 2.13268 2.53792 2.78889 3.16981 3.35709 3.59274 3.89000 4.15707 4.34299 4.51734 4.58295 4.65268 4.68548 4.87321 5.07232 5.12490 5.27285 5.31003 5.57532 5.60330 5.76268 6.01459 6.24878 6.51361 6.67460 7.10611 7.15747 7.62069 9.11616 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.010122 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.989064 B = 2765.707052 C = 3275.314426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.064 0.936 4 C 0.037 3.963 5 C -0.485 4.485 6 H 0.076 0.924 7 C -0.013 4.013 8 N -0.947 5.947 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.630 5.630 14 C 0.015 3.985 15 C 0.527 3.473 16 O -0.552 6.552 17 O -0.491 6.491 18 C -0.169 4.169 19 C -0.124 4.124 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.071 0.929 23 H -0.010 1.010 24 H -0.008 1.008 25 H 0.254 0.746 26 H 0.350 0.650 27 H 0.417 0.583 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 4.187 -12.262 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.007 4.007 3 H 0.083 0.917 4 C 0.000 4.000 5 C -0.523 4.523 6 H 0.094 0.906 7 C -0.208 4.208 8 N -0.590 5.590 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.261 5.261 14 C -0.080 4.080 15 C 0.372 3.628 16 O -0.444 6.444 17 O -0.302 6.302 18 C -0.209 4.209 19 C -0.161 4.161 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.009 0.991 24 H 0.010 0.990 25 H 0.063 0.937 26 H 0.171 0.829 27 H 0.277 0.723 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.674 4.072 -12.182 13.669 hybrid contribution 0.537 0.411 0.492 0.836 sum -4.137 4.483 -11.690 13.187 Atomic orbital electron populations 1.22599 0.96781 1.02130 1.02284 1.21504 0.91840 0.97486 0.89880 0.91748 1.18999 0.95537 0.94066 0.91424 1.21763 0.93256 1.30927 1.06396 0.90628 1.25859 1.02429 0.96291 0.96178 1.70114 1.36688 1.38903 1.13313 0.85574 0.81388 0.77340 0.77714 1.18731 1.21317 1.21500 1.60075 1.59653 1.06200 1.00158 1.21073 0.97806 0.95404 0.93683 1.22221 0.78069 0.83564 0.78942 1.90653 1.67315 1.47525 1.38921 1.84833 1.52765 1.52311 1.40288 1.23854 0.91983 1.02958 1.02102 1.23383 1.00229 1.01321 0.91187 0.92328 0.92813 0.90974 0.99141 0.99010 0.93690 0.82869 0.72328 0.85560 0.87792 0.87212 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.46 8.91 71.98 0.64 -4.82 16 2 C 0.10 3.93 2.19 44.92 0.10 4.03 16 3 H 0.06 2.63 6.05 -2.39 -0.01 2.61 16 4 C 0.04 1.89 4.65 29.85 0.14 2.03 16 5 C -0.48 -27.06 8.84 25.60 0.23 -26.83 16 6 H 0.08 4.12 6.47 -2.91 -0.02 4.10 16 7 C -0.01 -0.75 5.46 84.65 0.46 -0.29 16 8 N -0.95 -58.39 13.29 21.45 0.28 -58.10 16 9 Si 0.95 45.76 29.54 68.60 2.03 47.78 16 10 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 N -0.63 -21.73 5.98 -451.96 -2.70 -24.44 16 14 C 0.01 0.42 2.31 2.78 0.01 0.43 16 15 C 0.53 17.39 7.64 71.24 0.54 17.94 16 16 O -0.55 -19.13 17.23 21.96 0.38 -18.75 16 17 O -0.49 -16.59 10.20 -51.40 -0.52 -17.12 16 18 C -0.17 -3.67 8.63 30.62 0.26 -3.40 16 19 C -0.12 -2.70 9.81 30.62 0.30 -2.39 16 20 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.07 1.79 5.55 -2.39 -0.01 1.78 16 23 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.35 10.74 8.40 -89.69 -0.75 9.98 16 27 H 0.42 10.06 9.10 -74.06 -0.67 9.38 16 28 H 0.13 2.29 6.81 -2.39 -0.02 2.28 16 29 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.11 2.37 7.99 -2.39 -0.02 2.35 16 31 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.61 263.50 1.87 -67.74 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.28 Total: 16.19 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 2.68 Total: -13.31 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.42 Total: -82.54 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.15 Total: -35.87 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.61 1.87 -67.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709958622.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.462 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds