Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.57077 * 2 1 4 4 C 1.54483 * 110.50987 * 237.31511 * 2 1 3 5 5 O 1.44423 * 104.80649 * 265.33438 * 4 2 1 6 6 C 1.44782 * 105.29598 * 319.45668 * 5 4 2 7 7 C 1.54485 * 104.63210 * 40.53186 * 6 5 4 8 8 H 1.08990 * 110.51461 * 217.27885 * 7 6 5 9 9 N 1.46500 * 110.50763 * 94.70319 * 7 6 5 10 10 C 1.46501 * 120.00213 * 312.42061 * 9 7 6 11 11 C 1.34773 * 119.99735 * 132.42873 * 9 7 6 12 12 O 1.21681 * 120.00217 * 359.97438 * 11 9 7 13 13 C 1.46378 * 119.99738 * 179.97438 * 11 9 7 14 14 H 1.07998 * 120.00578 * 359.97438 * 13 11 9 15 15 C 1.40047 * 119.99562 * 179.97438 * 13 11 9 16 16 N 1.30671 * 120.00532 * 359.72676 * 15 13 11 17 17 Si 1.86814 * 119.99839 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46580 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46539 * 120.00020 * 17 15 13 20 20 H 1.48498 * 109.47188 * 240.00215 * 17 15 13 21 21 H 1.09000 * 109.47160 * 285.07068 * 1 2 3 22 22 H 1.09002 * 109.46583 * 45.06697 * 1 2 3 23 23 H 1.08997 * 109.47615 * 165.06640 * 1 2 3 24 24 H 1.09002 * 110.37203 * 24.17098 * 4 2 1 25 25 H 1.09005 * 110.36929 * 146.50348 * 4 2 1 26 26 H 1.09006 * 110.42378 * 281.77232 * 6 5 4 27 27 H 1.09008 * 110.48793 * 159.32376 * 6 5 4 28 28 H 1.09009 * 109.47254 * 270.49614 * 10 9 7 29 29 H 1.08998 * 109.46949 * 30.49478 * 10 9 7 30 30 H 1.09000 * 109.47468 * 150.49430 * 10 9 7 31 31 H 0.96995 * 120.00313 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0712 -0.7814 -1.2178 5 8 2.3069 -2.1178 -0.7237 6 6 2.8778 -1.9423 0.5951 7 6 2.0714 -0.7813 1.2182 8 1 2.7199 -0.1463 1.8216 9 7 0.9661 -1.3005 2.0275 10 6 0.0908 -2.3444 1.4886 11 6 0.7544 -0.8176 3.2679 12 8 1.4816 0.0493 3.7156 13 6 -0.3503 -1.3359 4.0763 14 1 -0.9959 -2.1049 3.6789 15 6 -0.5698 -0.8345 5.3654 16 7 0.2146 0.0923 5.8485 17 14 -1.9801 -1.4954 6.3970 18 1 -2.7100 -2.5358 5.6288 19 1 -1.4426 -2.0897 7.6473 20 1 -2.9082 -0.3866 6.7351 21 1 -0.3633 0.2672 0.9923 22 1 -0.3632 0.7259 -0.7276 23 1 -0.3634 -0.9929 -0.2648 24 1 1.3310 -0.7975 -2.0178 25 1 3.0023 -0.3374 -1.5701 26 1 3.9320 -1.6751 0.5208 27 1 2.7563 -2.8494 1.1873 28 1 -0.7435 -1.8823 0.9607 29 1 0.6553 -2.9711 0.7982 30 1 -0.2906 -2.9564 2.3059 31 1 0.0622 0.4398 6.7411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710977189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = -91.999048 kcal Electronic energy + Delta-G solvation = -15091.751095 eV Core-core repulsion = 12565.897034 eV Total energy + Delta-G solvation = -2525.854060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.17827 -38.88539 -35.82640 -34.61510 -33.36891 -30.65275 -28.24974 -27.65356 -26.56643 -23.54223 -21.99653 -20.29773 -18.58696 -17.91084 -17.32718 -16.90288 -16.41873 -15.82638 -15.63967 -15.17250 -14.24037 -14.20188 -13.80222 -13.58246 -13.13797 -13.00896 -12.86622 -12.74298 -12.23394 -12.15443 -12.07758 -11.98681 -11.89576 -11.54194 -10.95270 -10.72866 -9.77414 -9.00986 -8.29113 -6.83909 1.38717 1.39334 1.56849 2.23009 2.45138 2.81902 3.01422 3.53784 3.76267 3.93888 4.06772 4.17602 4.33713 4.54139 4.58314 4.73628 4.74427 4.79720 4.85252 4.96098 5.05917 5.07799 5.24802 5.37419 5.42120 5.74992 5.83381 6.14639 6.44888 6.88102 7.42321 8.47354 8.67449 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053627 B = 0.008921 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.001711 B = 3138.041279 C = 3231.273860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 H 0.081 0.919 4 C 0.057 3.943 5 O -0.383 6.383 6 C 0.047 3.953 7 C 0.108 3.892 8 H 0.067 0.933 9 N -0.629 5.629 10 C 0.092 3.908 11 C 0.540 3.460 12 O -0.633 6.633 13 C -0.566 4.566 14 H 0.091 0.909 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 0.994 3.006 18 H -0.246 1.246 19 H -0.269 1.269 20 H -0.269 1.269 21 H 0.026 0.974 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -4.089 -11.224 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.019 4.019 5 O -0.302 6.302 6 C -0.031 4.031 7 C 0.002 3.998 8 H 0.086 0.914 9 N -0.364 5.364 10 C -0.051 4.051 11 C 0.347 3.653 12 O -0.521 6.521 13 C -0.603 4.603 14 H 0.109 0.891 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.813 3.187 18 H -0.169 1.169 19 H -0.194 1.194 20 H -0.194 1.194 21 H 0.045 0.955 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.129 0.871 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.195 -3.736 -10.976 11.596 hybrid contribution -0.281 0.330 0.956 1.050 sum -0.477 -3.406 -10.020 10.594 Atomic orbital electron populations 1.21895 0.94002 1.02575 1.00512 1.22907 0.97787 0.99981 0.95091 0.90067 1.23574 1.01051 0.81799 0.95468 1.89115 1.83224 1.27150 1.30746 1.23735 0.96936 0.98587 0.83793 1.22188 0.89748 0.95521 0.92296 0.91441 1.47658 1.31683 1.41825 1.15269 1.21837 0.94121 0.90394 0.98749 1.18637 0.85235 0.81341 0.80132 1.90532 1.52122 1.36652 1.72749 1.21547 1.14480 1.23959 1.00279 0.89075 1.26984 0.99189 0.93404 0.99087 1.70198 1.35835 1.22980 1.16141 0.85027 0.76988 0.79008 0.77643 1.16871 1.19429 1.19445 0.95459 0.91565 0.90745 0.87128 0.90521 0.90038 0.89307 0.92742 0.90797 0.92307 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.47 71.98 0.54 -3.74 16 2 C -0.14 -4.35 3.70 -9.78 -0.04 -4.39 16 3 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.06 1.41 7.13 72.49 0.52 1.92 16 5 O -0.38 -11.21 10.80 -148.98 -1.61 -12.82 16 6 C 0.05 1.49 6.43 72.49 0.47 1.95 16 7 C 0.11 4.24 3.48 46.01 0.16 4.40 16 8 H 0.07 3.11 7.03 -2.39 -0.02 3.09 16 9 N -0.63 -28.62 1.66 -821.99 -1.37 -29.98 16 10 C 0.09 3.41 8.48 127.77 1.08 4.49 16 11 C 0.54 31.48 7.38 86.36 0.64 32.12 16 12 O -0.63 -42.62 14.41 -4.29 -0.06 -42.68 16 13 C -0.57 -32.09 8.74 24.83 0.22 -31.87 16 14 H 0.09 4.66 5.99 -2.91 -0.02 4.64 16 15 C 0.03 1.58 5.50 85.30 0.47 2.05 16 16 N -0.82 -50.59 11.83 21.83 0.26 -50.33 16 17 Si 0.99 41.12 29.56 68.60 2.03 43.14 16 18 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H 0.03 1.11 6.99 -2.39 -0.02 1.09 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 23 H 0.07 2.23 5.42 -2.39 -0.01 2.22 16 24 H 0.11 2.23 7.87 -2.39 -0.02 2.21 16 25 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.09 2.90 7.53 -2.38 -0.02 2.89 16 28 H 0.05 1.89 5.37 -2.38 -0.01 1.88 16 29 H 0.07 2.41 5.93 -2.39 -0.01 2.40 16 30 H 0.06 2.27 6.07 -2.39 -0.01 2.26 16 31 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 Total: -1.00 -73.83 246.94 4.43 -69.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.13 Total: 16.33 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 4.05 Total: 6.94 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.11 Total: -80.31 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.67 Total: -55.50 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -73.83 4.43 -69.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710977189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.603 kcal (2) G-P(sol) polarization free energy of solvation -73.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds