Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 110.80537 * 2 1 4 4 C 1.54998 * 110.90776 * 236.32869 * 2 1 3 5 5 O 1.44575 * 103.58653 * 204.85569 * 4 2 1 6 6 C 1.43745 * 106.86819 * 39.88227 * 5 4 2 7 7 H 1.08996 * 109.88138 * 93.17001 * 6 5 4 8 8 C 1.50707 * 109.88066 * 214.17202 * 6 5 4 9 9 O 1.21291 * 119.99193 * 3.56309 * 8 6 5 10 10 N 1.34767 * 120.00277 * 183.29457 * 8 6 5 11 11 C 1.46505 * 120.00103 * 359.97438 * 10 8 6 12 12 C 1.37100 * 120.00237 * 179.97438 * 10 8 6 13 13 H 1.08004 * 119.99632 * 322.69897 * 12 10 8 14 14 C 1.38947 * 120.00305 * 142.70031 * 12 10 8 15 15 N 1.31406 * 120.00118 * 158.41184 * 14 12 10 16 16 Si 1.86797 * 119.99747 * 338.40920 * 14 12 10 17 17 H 1.48502 * 109.47226 * 95.74434 * 16 14 12 18 18 H 1.48502 * 109.47282 * 215.74504 * 16 14 12 19 19 H 1.48506 * 109.47527 * 335.74511 * 16 14 12 20 20 C 1.54103 * 107.42408 * 333.66842 * 6 5 4 21 21 H 1.09003 * 109.47503 * 296.37112 * 1 2 3 22 22 H 1.08995 * 109.47399 * 56.37180 * 1 2 3 23 23 H 1.09003 * 109.47090 * 176.37409 * 1 2 3 24 24 H 1.08991 * 110.61581 * 323.27914 * 4 2 1 25 25 H 1.08997 * 110.61216 * 86.12277 * 4 2 1 26 26 H 1.09006 * 109.46677 * 85.01667 * 11 10 8 27 27 H 1.08999 * 109.47600 * 205.01537 * 11 10 8 28 28 H 1.09003 * 109.47285 * 325.02156 * 11 10 8 29 29 H 0.97002 * 119.99677 * 180.02562 * 15 14 12 30 30 H 1.08997 * 110.48867 * 120.62901 * 20 6 5 31 31 H 1.08993 * 110.49137 * 243.15006 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8028 -1.2050 5 8 3.3955 -1.2180 -0.7628 6 6 3.2718 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7026 8 6 4.5349 -1.2317 1.3614 9 8 5.4323 -0.6527 0.7862 10 7 4.6653 -1.5515 2.6641 11 6 3.5787 -2.2450 3.3603 12 6 5.8146 -1.2277 3.3378 13 1 6.7700 -1.2943 2.8386 14 6 5.7503 -0.8142 4.6627 15 7 6.8106 -0.9095 5.4330 16 14 4.1565 -0.1227 5.3489 17 1 3.4037 -1.2025 6.0362 18 1 4.4632 0.9606 6.3172 19 1 3.3353 0.4238 4.2387 20 6 2.0824 -0.8008 1.2043 21 1 -0.3634 0.4565 0.9207 22 1 -0.3634 0.5691 -0.8556 23 1 -0.3633 -1.0256 -0.0650 24 1 1.4562 -1.6709 -1.4080 25 1 2.1556 -0.1681 -2.0881 26 1 3.6688 -3.3188 3.1957 27 1 3.6389 -2.0349 4.4282 28 1 2.6201 -1.8975 2.9751 29 1 6.7655 -0.6211 6.3580 30 1 1.3246 -1.4837 1.5883 31 1 2.4205 -0.1262 1.9908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718504651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = -66.140267 kcal Electronic energy + Delta-G solvation = -14951.698482 eV Core-core repulsion = 12426.965742 eV Total energy + Delta-G solvation = -2524.732739 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86201 -37.74758 -34.80994 -33.37654 -32.13728 -29.96326 -26.40731 -26.26879 -25.11046 -22.64415 -20.53360 -19.15442 -17.06480 -16.42530 -15.97262 -15.61085 -15.15526 -14.56121 -13.87114 -13.80537 -13.44291 -12.90974 -12.63826 -12.57940 -12.29424 -12.04594 -11.79337 -11.18766 -11.10974 -10.88967 -10.68826 -10.53076 -10.33268 -9.92735 -9.62635 -9.05724 -8.31991 -7.73295 -6.39224 -3.96236 3.00937 3.19599 3.23061 3.66901 3.90296 4.13997 4.47661 4.72255 4.81268 4.93535 5.02897 5.30689 5.37762 5.42688 5.55759 5.63064 5.69894 5.79207 5.84972 5.89972 6.00572 6.08662 6.17651 6.26670 6.31075 7.04591 7.56422 8.28603 8.53298 8.97653 9.31234 9.78330 10.73027 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040856 B = 0.010636 C = 0.009185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.176575 B = 2631.969802 C = 3047.560131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.087 0.913 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.064 3.936 7 H 0.080 0.920 8 C 0.464 3.536 9 O -0.546 6.546 10 N -0.470 5.470 11 C 0.055 3.945 12 C -0.315 4.315 13 H 0.106 0.894 14 C 0.058 3.942 15 N -0.864 5.864 16 Si 0.880 3.120 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.144 4.144 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.274 0.726 30 H 0.081 0.919 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 -1.067 -5.939 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 H 0.105 0.895 4 C -0.029 4.029 5 O -0.265 6.265 6 C 0.003 3.997 7 H 0.098 0.902 8 C 0.251 3.749 9 O -0.425 6.425 10 N -0.194 5.194 11 C -0.089 4.089 12 C -0.442 4.442 13 H 0.123 0.877 14 C -0.147 4.147 15 N -0.501 5.501 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.182 4.182 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.381 -0.751 -6.171 15.667 hybrid contribution -1.014 0.302 0.802 1.327 sum -15.395 -0.449 -5.369 16.311 Atomic orbital electron populations 1.21711 0.93990 1.01953 1.02028 1.22748 0.96210 1.00703 0.95000 0.89483 1.23659 0.84793 0.97266 0.97163 1.89044 1.28154 1.86189 1.23077 1.22626 0.95092 0.98836 0.83176 0.90203 1.20116 0.88448 0.82733 0.83606 1.90572 1.41910 1.42894 1.67155 1.43590 1.16131 1.51240 1.08416 1.22196 0.90785 0.97259 0.98649 1.19066 0.85785 1.44887 0.94438 0.87672 1.25369 0.97377 0.95950 0.96038 1.69752 1.30071 1.43501 1.06744 0.86926 0.84000 0.79194 0.79100 1.20247 1.21433 1.18919 1.23087 0.96745 0.99499 0.98904 0.92246 0.92374 0.92397 0.92331 0.89127 0.92960 0.91504 0.92269 0.91587 0.90003 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.13 -1.68 3.73 -88.61 -0.33 -2.01 16 3 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.05 0.66 7.18 38.21 0.27 0.93 16 5 O -0.35 -6.75 10.75 -54.80 -0.59 -7.34 16 6 C 0.06 1.22 3.08 -27.30 -0.08 1.13 16 7 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 8 C 0.46 11.53 6.82 -10.99 -0.07 11.46 16 9 O -0.55 -16.11 16.40 -14.02 -0.23 -16.34 16 10 N -0.47 -11.73 2.58 -122.18 -0.32 -12.04 16 11 C 0.05 1.08 8.59 59.85 0.51 1.59 16 12 C -0.31 -9.18 9.37 -14.93 -0.14 -9.32 16 13 H 0.11 3.45 7.91 -52.48 -0.42 3.04 16 14 C 0.06 1.63 5.29 -17.47 -0.09 1.54 16 15 N -0.86 -25.31 13.96 55.50 0.77 -24.54 16 16 Si 0.88 20.55 24.97 -169.99 -4.24 16.31 16 17 H -0.28 -5.92 6.70 56.52 0.38 -5.54 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 20 C -0.14 -2.22 4.27 -25.20 -0.11 -2.33 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.06 0.67 8.01 -51.93 -0.42 0.25 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.39 3.45 -51.93 -0.18 1.21 16 28 H 0.06 0.97 4.51 -51.93 -0.23 0.73 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.00 7.31 -51.93 -0.38 0.62 16 31 H 0.08 1.50 7.34 -51.93 -0.38 1.12 16 LS Contribution 250.70 15.07 3.78 3.78 Total: -1.00 -33.96 250.70 -4.64 -38.60 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.11 Total: -0.42 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.30 Total: 2.01 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.46 Total: -36.58 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.82 Total: -23.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.24 Total: 16.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.96 -4.64 -38.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718504651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.543 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds