Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 110.80537 * 2 1 4 4 C 1.54998 * 110.90776 * 236.32869 * 2 1 3 5 5 O 1.44575 * 103.58653 * 204.85569 * 4 2 1 6 6 C 1.43745 * 106.86819 * 39.88227 * 5 4 2 7 7 H 1.08996 * 109.88138 * 93.17001 * 6 5 4 8 8 C 1.50707 * 109.88066 * 214.17202 * 6 5 4 9 9 O 1.21291 * 119.99193 * 3.56309 * 8 6 5 10 10 N 1.34767 * 120.00277 * 183.29457 * 8 6 5 11 11 C 1.46505 * 120.00103 * 359.97438 * 10 8 6 12 12 C 1.37100 * 120.00237 * 179.97438 * 10 8 6 13 13 H 1.08004 * 119.99632 * 322.69897 * 12 10 8 14 14 C 1.38947 * 120.00305 * 142.70031 * 12 10 8 15 15 N 1.31406 * 120.00118 * 158.41184 * 14 12 10 16 16 Si 1.86797 * 119.99747 * 338.40920 * 14 12 10 17 17 H 1.48502 * 109.47226 * 95.74434 * 16 14 12 18 18 H 1.48502 * 109.47282 * 215.74504 * 16 14 12 19 19 H 1.48506 * 109.47527 * 335.74511 * 16 14 12 20 20 C 1.54103 * 107.42408 * 333.66842 * 6 5 4 21 21 H 1.09003 * 109.47503 * 296.37112 * 1 2 3 22 22 H 1.08995 * 109.47399 * 56.37180 * 1 2 3 23 23 H 1.09003 * 109.47090 * 176.37409 * 1 2 3 24 24 H 1.08991 * 110.61581 * 323.27914 * 4 2 1 25 25 H 1.08997 * 110.61216 * 86.12277 * 4 2 1 26 26 H 1.09006 * 109.46677 * 85.01667 * 11 10 8 27 27 H 1.08999 * 109.47600 * 205.01537 * 11 10 8 28 28 H 1.09003 * 109.47285 * 325.02156 * 11 10 8 29 29 H 0.97002 * 119.99677 * 180.02562 * 15 14 12 30 30 H 1.08997 * 110.48867 * 120.62901 * 20 6 5 31 31 H 1.08993 * 110.49137 * 243.15006 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8028 -1.2050 5 8 3.3955 -1.2180 -0.7628 6 6 3.2718 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7026 8 6 4.5349 -1.2317 1.3614 9 8 5.4323 -0.6527 0.7862 10 7 4.6653 -1.5515 2.6641 11 6 3.5787 -2.2450 3.3603 12 6 5.8146 -1.2277 3.3378 13 1 6.7700 -1.2943 2.8386 14 6 5.7503 -0.8142 4.6627 15 7 6.8106 -0.9095 5.4330 16 14 4.1565 -0.1227 5.3489 17 1 3.4037 -1.2025 6.0362 18 1 4.4632 0.9606 6.3172 19 1 3.3353 0.4238 4.2387 20 6 2.0824 -0.8008 1.2043 21 1 -0.3634 0.4565 0.9207 22 1 -0.3634 0.5691 -0.8556 23 1 -0.3633 -1.0256 -0.0650 24 1 1.4562 -1.6709 -1.4080 25 1 2.1556 -0.1681 -2.0881 26 1 3.6688 -3.3188 3.1957 27 1 3.6389 -2.0349 4.4282 28 1 2.6201 -1.8975 2.9751 29 1 6.7655 -0.6211 6.3580 30 1 1.3246 -1.4837 1.5883 31 1 2.4205 -0.1262 1.9908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718504651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = -91.545237 kcal Electronic energy + Delta-G solvation = -14952.800124 eV Core-core repulsion = 12426.965742 eV Total energy + Delta-G solvation = -2525.834382 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.37438 -39.40313 -36.79942 -34.56113 -34.18382 -31.39483 -28.12207 -27.31486 -26.86690 -24.13681 -21.57572 -20.94994 -19.13174 -18.10613 -17.65593 -16.92064 -16.71289 -16.09908 -15.46818 -15.25068 -14.85511 -14.50544 -14.29028 -14.05853 -13.70735 -13.50882 -13.06263 -12.69630 -12.56949 -12.27194 -12.22163 -11.85592 -11.68062 -11.60365 -11.07242 -10.92803 -10.19149 -9.76490 -8.55658 -6.20190 1.17352 1.30299 1.43893 1.83841 2.15002 2.37821 2.87654 3.14515 3.47959 3.76469 3.81643 3.95661 4.21547 4.27843 4.40766 4.53011 4.57277 4.67149 4.77391 4.78230 4.83407 4.93752 5.12317 5.24790 5.39229 5.46821 5.84879 5.98408 6.53026 6.88260 7.21475 7.80348 8.61918 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040856 B = 0.010636 C = 0.009185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.176575 B = 2631.969802 C = 3047.560131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 H 0.066 0.934 4 C 0.042 3.958 5 O -0.389 6.389 6 C 0.073 3.927 7 H 0.112 0.888 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.477 5.477 11 C 0.047 3.953 12 C -0.344 4.344 13 H 0.038 0.962 14 C 0.010 3.990 15 N -0.910 5.910 16 Si 0.957 3.043 17 H -0.231 1.231 18 H -0.289 1.289 19 H -0.255 1.255 20 C -0.143 4.143 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.282 0.718 30 H 0.128 0.872 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 -1.649 -5.555 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 H 0.085 0.915 4 C -0.034 4.034 5 O -0.308 6.308 6 C 0.012 3.988 7 H 0.130 0.870 8 C 0.238 3.762 9 O -0.498 6.498 10 N -0.200 5.200 11 C -0.094 4.094 12 C -0.472 4.472 13 H 0.056 0.944 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.779 3.221 17 H -0.156 1.156 18 H -0.216 1.216 19 H -0.178 1.178 20 C -0.181 4.181 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.139 -1.373 -5.776 20.039 hybrid contribution 0.587 0.468 0.606 0.964 sum -18.553 -0.905 -5.171 19.281 Atomic orbital electron populations 1.21684 0.90584 1.03580 1.03029 1.22739 0.98831 0.99140 0.93581 0.91504 1.24014 0.82839 0.98879 0.97658 1.89009 1.31918 1.86662 1.23244 1.22622 0.92411 1.00999 0.82782 0.87030 1.21393 0.89879 0.81329 0.83610 1.90518 1.44782 1.45832 1.68663 1.43707 1.16025 1.51441 1.08797 1.22490 0.90580 0.98517 0.97843 1.18667 0.85568 1.47670 0.95257 0.94393 1.26268 1.02279 0.95044 0.95662 1.69872 1.33206 1.44073 1.07574 0.85738 0.78705 0.79112 0.78564 1.15558 1.21616 1.17847 1.23172 0.96121 0.99819 0.98973 0.91666 0.91039 0.90459 0.89013 0.88083 0.90343 0.92152 0.88019 0.90824 0.85381 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.19 71.98 0.66 -1.16 16 2 C -0.12 -2.83 3.73 -9.49 -0.04 -2.86 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.04 1.01 7.18 72.67 0.52 1.53 16 5 O -0.39 -14.76 10.75 -130.27 -1.40 -16.16 16 6 C 0.07 2.61 3.08 30.22 0.09 2.70 16 7 H 0.11 3.27 8.00 -2.39 -0.02 3.25 16 8 C 0.45 22.75 6.82 87.66 0.60 23.35 16 9 O -0.61 -38.52 16.40 15.64 0.26 -38.27 16 10 N -0.48 -24.00 2.58 -658.87 -1.70 -25.70 16 11 C 0.05 1.71 8.59 127.77 1.10 2.80 16 12 C -0.34 -21.12 9.37 84.04 0.79 -20.34 16 13 H 0.04 2.76 7.91 -2.91 -0.02 2.73 16 14 C 0.01 0.56 5.29 84.93 0.45 1.00 16 15 N -0.91 -55.12 13.96 21.66 0.30 -54.82 16 16 Si 0.96 41.48 24.97 68.60 1.71 43.19 16 17 H -0.23 -8.45 6.70 99.48 0.67 -7.78 16 18 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 20 C -0.14 -3.83 4.27 31.59 0.13 -3.70 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 24 H 0.09 1.63 8.01 -2.39 -0.02 1.61 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.06 2.27 3.45 -2.39 -0.01 2.26 16 28 H 0.10 2.79 4.51 -2.39 -0.01 2.78 16 29 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.13 2.25 7.31 -2.39 -0.02 2.23 16 31 H 0.06 1.95 7.34 -2.39 -0.02 1.93 16 Total: -1.00 -82.21 250.70 4.55 -77.65 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.08 Total: 10.77 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.31 Total: 3.33 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.40 Total: -80.52 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -1.14 Total: -54.43 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.71 Total: 43.19 kcal Total: -82.21 4.55 -77.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718504651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.893 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds