Wall clock time and date at job start Mon Mar 30 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.80724 * 2 1 4 4 C 1.54997 * 110.91161 * 236.36688 * 2 1 3 5 5 O 1.44379 * 103.49361 * 204.77735 * 4 2 1 6 6 C 1.43745 * 106.97030 * 40.06121 * 5 4 2 7 7 H 1.09002 * 109.87827 * 92.91340 * 6 5 4 8 8 C 1.50701 * 109.87489 * 213.90852 * 6 5 4 9 9 O 1.21281 * 120.00378 * 3.55261 * 8 6 5 10 10 N 1.34777 * 120.00246 * 183.54732 * 8 6 5 11 11 C 1.46494 * 120.00634 * 180.02562 * 10 8 6 12 12 C 1.50694 * 109.47587 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00006 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00251 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99766 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47055 * 90.00064 * 16 14 12 18 18 H 1.48507 * 109.46867 * 209.99797 * 16 14 12 19 19 H 1.48494 * 109.47094 * 329.99500 * 16 14 12 20 20 C 1.54097 * 107.29791 * 333.48464 * 6 5 4 21 21 H 1.09002 * 109.47153 * 182.17689 * 1 2 3 22 22 H 1.09001 * 109.46832 * 62.17879 * 1 2 3 23 23 H 1.09004 * 109.47261 * 302.17861 * 1 2 3 24 24 H 1.09004 * 110.61336 * 323.28385 * 4 2 1 25 25 H 1.08999 * 110.61331 * 86.11842 * 4 2 1 26 26 H 0.97005 * 119.99308 * 0.02562 * 10 8 6 27 27 H 1.09000 * 109.47148 * 300.00231 * 11 10 8 28 28 H 1.09002 * 109.47154 * 59.99893 * 11 10 8 29 29 H 0.97006 * 120.00103 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.48704 * 243.35525 * 20 6 5 31 31 H 1.09003 * 110.48716 * 120.71037 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2055 5 8 3.3942 -1.2141 -0.7628 6 6 3.2718 -1.5883 0.6197 7 1 3.0826 -2.6589 0.6985 8 6 4.5363 -1.2359 1.3597 9 8 5.4337 -0.6565 0.7854 10 7 4.6701 -1.5644 2.6600 11 6 5.8991 -1.2214 3.3797 12 6 5.7953 -1.6963 4.8060 13 1 4.9033 -2.2035 5.1428 14 6 6.8392 -1.4835 5.6813 15 7 7.9253 -0.8655 5.2714 16 14 6.7108 -2.0729 7.4492 17 1 7.2368 -3.4581 7.5486 18 1 7.5050 -1.1775 8.3284 19 1 5.2887 -2.0515 7.8760 20 6 2.0824 -0.8016 1.2037 21 1 -0.3633 -1.0269 0.0390 22 1 -0.3633 0.4796 -0.9089 23 1 -0.3634 0.5473 0.8698 24 1 1.4562 -1.6700 -1.4092 25 1 2.1557 -0.1667 -2.0883 26 1 3.9524 -2.0281 3.1193 27 1 6.7492 -1.7038 2.8974 28 1 6.0387 -0.1404 3.3655 29 1 8.6600 -0.7160 5.8870 30 1 2.4209 -0.1258 1.9891 31 1 1.3246 -1.4848 1.5873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718506651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:43 Heat of formation + Delta-G solvation = -97.771666 kcal Electronic energy + Delta-G solvation = -14164.376082 eV Core-core repulsion = 11638.271702 eV Total energy + Delta-G solvation = -2526.104380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97122 -37.86509 -34.22795 -33.53458 -32.37287 -30.25190 -27.10855 -26.35759 -23.77700 -22.09891 -20.69207 -19.64257 -17.56922 -16.11469 -15.94542 -15.73113 -14.91718 -14.61368 -14.14382 -13.97319 -13.66307 -13.12997 -12.78891 -12.29207 -12.03135 -11.84590 -11.51639 -11.29464 -11.00299 -10.90161 -10.85949 -10.74721 -10.30694 -9.85537 -9.39925 -8.81723 -8.73617 -7.88282 -6.16457 -4.23659 3.24257 3.29614 3.31049 3.32683 3.62671 4.22528 4.35090 4.54610 4.69052 4.84516 5.14642 5.19355 5.22322 5.30614 5.44160 5.52493 5.64210 5.68305 5.71936 5.90131 5.98964 6.13248 6.85546 7.31824 7.43773 7.52116 7.67123 7.96827 8.61664 8.78502 9.10332 9.42941 10.93790 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054358 B = 0.006201 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.981150 B = 4514.199651 C = 4847.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 H 0.087 0.913 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.059 3.941 7 H 0.088 0.912 8 C 0.497 3.503 9 O -0.537 6.537 10 N -0.711 5.711 11 C 0.250 3.750 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.143 4.143 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.390 0.610 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.085 0.915 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 -0.966 -7.414 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 H 0.106 0.894 4 C -0.029 4.029 5 O -0.265 6.265 6 C -0.003 4.003 7 H 0.106 0.894 8 C 0.281 3.719 9 O -0.414 6.414 10 N -0.361 5.361 11 C 0.130 3.870 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.181 4.181 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.223 0.777 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.219 -0.476 -7.881 16.264 hybrid contribution -0.475 -0.537 1.352 1.530 sum -14.695 -1.013 -6.529 16.112 Atomic orbital electron populations 1.21716 0.93822 1.02095 1.02131 1.22747 0.96417 1.00658 0.94794 0.89419 1.23667 0.84468 0.97472 0.97303 1.89013 1.28484 1.86168 1.22841 1.22692 0.94438 0.99565 0.83560 0.89400 1.20284 0.88150 0.80520 0.82972 1.90675 1.41753 1.41403 1.67583 1.46395 1.21609 1.58475 1.09597 1.19121 0.80890 0.96618 0.90404 1.21215 1.02809 1.39452 0.94690 0.91866 1.24959 0.94967 0.94852 0.99246 1.69980 1.05753 1.40578 1.35939 0.86403 0.78174 0.78632 0.83622 1.20444 1.21002 1.19759 1.23015 0.96591 0.99514 0.98949 0.92342 0.92315 0.92121 0.92128 0.88917 0.77738 0.95473 0.95492 0.92421 0.89605 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.13 -1.40 3.72 -88.61 -0.33 -1.73 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.05 0.56 7.17 38.21 0.27 0.84 16 5 O -0.35 -5.95 10.74 -54.80 -0.59 -6.54 16 6 C 0.06 0.94 3.84 -27.31 -0.10 0.83 16 7 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.50 10.62 6.96 -10.98 -0.08 10.54 16 9 O -0.54 -14.14 16.53 -14.01 -0.23 -14.37 16 10 N -0.71 -15.26 5.53 -61.48 -0.34 -15.60 16 11 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 12 C -0.54 -14.79 9.28 -34.44 -0.32 -15.10 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C -0.14 -1.77 6.21 -25.20 -0.16 -1.93 16 21 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.18 7.70 -51.93 -0.40 0.78 16 31 H 0.08 0.82 7.83 -51.93 -0.41 0.41 16 LS Contribution 267.09 15.07 4.03 4.03 Total: -1.00 -33.47 267.09 -6.39 -39.86 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.48 Total: 1.29 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.50 Total: 1.06 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.40 Total: -41.13 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.82 Total: -20.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.47 -6.39 -39.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718506651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.911 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds