Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.80724 * 2 1 4 4 C 1.54997 * 110.91161 * 236.36688 * 2 1 3 5 5 O 1.44379 * 103.49361 * 204.77735 * 4 2 1 6 6 C 1.43745 * 106.97030 * 40.06121 * 5 4 2 7 7 H 1.09002 * 109.87827 * 92.91340 * 6 5 4 8 8 C 1.50701 * 109.87489 * 213.90852 * 6 5 4 9 9 O 1.21281 * 120.00378 * 3.55261 * 8 6 5 10 10 N 1.34777 * 120.00246 * 183.54732 * 8 6 5 11 11 C 1.46494 * 120.00634 * 180.02562 * 10 8 6 12 12 C 1.50694 * 109.47587 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00006 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00251 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99766 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47055 * 90.00064 * 16 14 12 18 18 H 1.48507 * 109.46867 * 209.99797 * 16 14 12 19 19 H 1.48494 * 109.47094 * 329.99500 * 16 14 12 20 20 C 1.54097 * 107.29791 * 333.48464 * 6 5 4 21 21 H 1.09002 * 109.47153 * 182.17689 * 1 2 3 22 22 H 1.09001 * 109.46832 * 62.17879 * 1 2 3 23 23 H 1.09004 * 109.47261 * 302.17861 * 1 2 3 24 24 H 1.09004 * 110.61336 * 323.28385 * 4 2 1 25 25 H 1.08999 * 110.61331 * 86.11842 * 4 2 1 26 26 H 0.97005 * 119.99308 * 0.02562 * 10 8 6 27 27 H 1.09000 * 109.47148 * 300.00231 * 11 10 8 28 28 H 1.09002 * 109.47154 * 59.99893 * 11 10 8 29 29 H 0.97006 * 120.00103 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.48704 * 243.35525 * 20 6 5 31 31 H 1.09003 * 110.48716 * 120.71037 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2055 5 8 3.3942 -1.2141 -0.7628 6 6 3.2718 -1.5883 0.6197 7 1 3.0826 -2.6589 0.6985 8 6 4.5363 -1.2359 1.3597 9 8 5.4337 -0.6565 0.7854 10 7 4.6701 -1.5644 2.6600 11 6 5.8991 -1.2214 3.3797 12 6 5.7953 -1.6963 4.8060 13 1 4.9033 -2.2035 5.1428 14 6 6.8392 -1.4835 5.6813 15 7 7.9253 -0.8655 5.2714 16 14 6.7108 -2.0729 7.4492 17 1 7.2368 -3.4581 7.5486 18 1 7.5050 -1.1775 8.3284 19 1 5.2887 -2.0515 7.8760 20 6 2.0824 -0.8016 1.2037 21 1 -0.3633 -1.0269 0.0390 22 1 -0.3633 0.4796 -0.9089 23 1 -0.3634 0.5473 0.8698 24 1 1.4562 -1.6700 -1.4092 25 1 2.1557 -0.1667 -2.0883 26 1 3.9524 -2.0281 3.1193 27 1 6.7492 -1.7038 2.8974 28 1 6.0387 -0.1404 3.3655 29 1 8.6600 -0.7160 5.8870 30 1 2.4209 -0.1258 1.9891 31 1 1.3246 -1.4848 1.5873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718506651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -122.568803 kcal Electronic energy + Delta-G solvation = -14165.451367 eV Core-core repulsion = 11638.271702 eV Total energy + Delta-G solvation = -2527.179664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.32330 -39.43526 -36.20493 -34.62676 -34.31969 -31.58848 -29.03602 -27.17659 -25.38207 -23.82430 -21.70051 -21.27702 -19.24511 -17.88963 -17.36402 -17.05617 -16.67170 -16.06474 -15.64354 -15.48617 -14.83331 -14.53885 -14.04782 -13.98701 -13.69456 -13.06109 -12.93111 -12.74575 -12.66196 -12.28884 -12.19237 -11.74399 -11.67555 -11.50358 -11.05498 -10.81821 -10.45061 -9.90083 -8.29857 -6.47302 1.43630 1.46535 1.57731 1.63378 2.13530 2.41572 3.04995 3.07800 3.48614 3.78042 3.80985 3.94332 4.25055 4.35122 4.54566 4.67612 4.77005 4.83531 4.92294 5.07267 5.11294 5.19591 5.24362 5.38653 5.44432 5.62394 5.81353 5.85419 6.62853 6.84648 7.21558 7.42307 8.82663 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054358 B = 0.006201 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.981150 B = 4514.199651 C = 4847.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 H 0.069 0.931 4 C 0.042 3.958 5 O -0.388 6.388 6 C 0.068 3.932 7 H 0.122 0.878 8 C 0.490 3.510 9 O -0.597 6.597 10 N -0.699 5.699 11 C 0.265 3.735 12 C -0.555 4.555 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.988 3.012 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.253 1.253 20 C -0.138 4.138 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.411 0.589 27 H -0.014 1.014 28 H -0.013 1.013 29 H 0.269 0.731 30 H 0.067 0.933 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -2.355 -6.503 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 H 0.087 0.913 4 C -0.034 4.034 5 O -0.307 6.307 6 C 0.007 3.993 7 H 0.139 0.861 8 C 0.277 3.723 9 O -0.478 6.478 10 N -0.351 5.351 11 C 0.143 3.857 12 C -0.593 4.593 13 H 0.106 0.894 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.811 3.189 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.176 1.176 20 C -0.176 4.176 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.247 0.753 27 H 0.004 0.996 28 H 0.005 0.995 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.354 -1.887 -6.977 18.799 hybrid contribution 0.495 -0.062 0.965 1.086 sum -16.859 -1.949 -6.012 18.005 Atomic orbital electron populations 1.21685 0.90928 1.03417 1.02989 1.22741 0.98656 0.99288 0.93688 0.91272 1.23989 0.82694 0.98940 0.97761 1.88977 1.31924 1.86623 1.23179 1.22735 0.91802 1.01785 0.82963 0.86057 1.21480 0.89547 0.78725 0.82585 1.90638 1.44459 1.43965 1.68752 1.46084 1.20474 1.58549 1.09948 1.18581 0.82033 0.93728 0.91393 1.21604 1.03824 1.39443 0.94427 0.89439 1.26118 0.94272 0.94599 1.04719 1.70152 1.06899 1.42053 1.38033 0.85103 0.79108 0.77975 0.76694 1.19582 1.21042 1.17649 1.23087 0.95905 0.99750 0.98859 0.90689 0.91133 0.91745 0.89136 0.88036 0.75292 0.99639 0.99531 0.92220 0.91464 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.12 -2.45 3.72 -9.49 -0.04 -2.49 16 3 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 4 C 0.04 0.88 7.17 72.67 0.52 1.41 16 5 O -0.39 -12.99 10.74 -130.27 -1.40 -14.38 16 6 C 0.07 2.07 3.84 30.22 0.12 2.18 16 7 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 8 C 0.49 21.39 6.96 87.66 0.61 22.00 16 9 O -0.60 -33.18 16.53 15.67 0.26 -32.92 16 10 N -0.70 -30.47 5.53 -466.80 -2.58 -33.05 16 11 C 0.27 14.96 5.43 85.63 0.46 15.43 16 12 C -0.56 -30.33 9.28 25.60 0.24 -30.09 16 13 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 14 C 0.00 0.13 5.46 84.66 0.46 0.60 16 15 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 16 Si 0.99 42.18 29.54 68.60 2.03 44.21 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 20 C -0.14 -3.08 6.21 31.58 0.20 -2.89 16 21 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.09 1.39 8.05 -2.38 -0.02 1.37 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.41 14.29 8.32 -92.70 -0.77 13.52 16 27 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 30 H 0.07 1.77 7.70 -2.39 -0.02 1.75 16 31 H 0.12 1.81 7.83 -2.39 -0.02 1.80 16 Total: -1.00 -76.98 267.09 2.17 -74.81 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.35 Total: 12.80 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 3.23 Total: 5.20 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.30 Total: -89.72 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.14 Total: -47.31 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.98 2.17 -74.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718506651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.759 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds