Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.91599 * 2 1 4 4 C 1.54908 * 111.00610 * 123.90076 * 2 1 3 5 5 N 1.47423 * 104.83357 * 81.06566 * 4 2 1 6 6 C 1.36940 * 125.65415 * 204.09288 * 5 4 2 7 7 H 1.07992 * 120.00168 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99699 * 0.04148 * 6 5 4 9 9 N 1.31620 * 119.99982 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99980 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47213 * 90.00302 * 10 8 6 12 12 H 1.48502 * 109.47231 * 210.00023 * 10 8 6 13 13 H 1.48505 * 109.47152 * 330.00073 * 10 8 6 14 14 C 1.47023 * 108.70235 * 24.12824 * 5 4 2 15 15 C 1.54330 * 107.27020 * 358.94091 * 14 5 4 16 16 H 1.09002 * 110.71820 * 96.34389 * 15 14 5 17 17 C 1.52997 * 110.72125 * 219.44185 * 15 14 5 18 18 C 1.50701 * 109.47212 * 293.54566 * 17 15 14 19 19 O 1.20826 * 119.99939 * 0.02562 * 18 17 15 20 20 O 1.34230 * 120.00046 * 179.97438 * 18 17 15 21 21 H 1.08998 * 109.46790 * 183.90193 * 1 2 3 22 22 H 1.09002 * 109.46689 * 303.89748 * 1 2 3 23 23 H 1.08990 * 109.47025 * 63.90129 * 1 2 3 24 24 H 1.09003 * 110.37026 * 322.22738 * 4 2 1 25 25 H 1.08997 * 110.46466 * 199.94937 * 4 2 1 26 26 H 0.96995 * 120.00182 * 179.97438 * 9 8 6 27 27 H 1.08993 * 109.88798 * 239.52640 * 14 5 4 28 28 H 1.09002 * 110.01431 * 118.42977 * 14 5 4 29 29 H 1.09002 * 109.47153 * 173.54568 * 17 15 14 30 30 H 1.09001 * 109.46832 * 53.54759 * 17 15 14 31 31 H 0.96691 * 117.00026 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0140 -2.2158 0.7734 6 6 1.9462 -3.3000 1.6072 7 1 1.8974 -4.2966 1.1942 8 6 1.9398 -3.1179 2.9833 9 7 1.9994 -1.9032 3.4866 10 14 1.8466 -4.5966 4.1207 11 1 3.2197 -5.0640 4.4387 12 1 1.1514 -4.2129 5.3756 13 1 1.0944 -5.6887 3.4522 14 6 2.0286 -2.2646 -0.6960 15 6 2.0861 -0.8079 -1.2022 16 1 3.1130 -0.5169 -1.4239 17 6 1.1965 -0.6272 -2.4338 18 6 1.7612 -1.4228 -3.5824 19 8 2.7712 -2.0684 -3.4313 20 8 1.1414 -1.4149 -4.7731 21 1 -0.3633 -1.0253 0.0699 22 1 -0.3633 0.5732 0.8530 23 1 -0.3633 0.4520 -0.9228 24 1 1.4673 -0.6461 2.0837 25 1 3.1180 -0.5239 1.4043 26 1 1.9946 -1.7759 4.4482 27 1 1.1220 -2.7479 -1.0599 28 1 2.9050 -2.8123 -1.0424 29 1 1.1615 0.4279 -2.7051 30 1 0.1893 -0.9782 -2.2091 31 1 1.5409 -1.9407 -5.4794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722644770.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -75.259341 kcal Electronic energy + Delta-G solvation = -14745.308038 eV Core-core repulsion = 12220.179866 eV Total energy + Delta-G solvation = -2525.128172 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19180 -37.97514 -35.92861 -33.37134 -30.71829 -30.26800 -26.66625 -25.60396 -23.87519 -21.51985 -19.84580 -18.47624 -17.88061 -16.87336 -16.28677 -15.78525 -14.76178 -14.64680 -13.69253 -13.34483 -12.87392 -12.35500 -12.21315 -11.98223 -11.66926 -11.41158 -11.20572 -11.12824 -10.75334 -10.70430 -10.37404 -10.00341 -9.88181 -9.77820 -9.70685 -9.38574 -8.58702 -6.74145 -5.59247 -2.99580 2.40298 3.20849 3.43863 3.48715 3.50548 4.54317 5.01523 5.20464 5.32055 5.55056 5.59923 5.63028 5.78036 5.96168 6.02292 6.20707 6.27535 6.32623 6.58948 6.64512 6.72544 6.92439 6.97981 7.06686 7.56303 7.70025 7.92283 8.05317 8.43479 9.29462 9.90422 10.56352 11.44887 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045296 B = 0.008429 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.009906 B = 3321.075516 C = 3690.764773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.066 0.934 4 C 0.157 3.843 5 N -0.604 5.604 6 C -0.218 4.218 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.924 5.924 10 Si 0.913 3.087 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C -0.087 4.087 16 H 0.078 0.922 17 C -0.101 4.101 18 C 0.473 3.527 19 O -0.507 6.507 20 O -0.525 6.525 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.109 0.891 25 H 0.010 0.990 26 H 0.251 0.749 27 H 0.015 0.985 28 H 0.029 0.971 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 4.676 -11.766 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.085 0.915 4 C 0.032 3.968 5 N -0.330 5.330 6 C -0.346 4.346 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.573 5.573 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.020 3.980 15 C -0.106 4.106 16 H 0.096 0.904 17 C -0.139 4.139 18 C 0.315 3.685 19 O -0.394 6.394 20 O -0.337 6.337 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.126 0.874 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.161 4.663 -11.171 12.511 hybrid contribution 0.375 -1.150 0.039 1.210 sum -2.787 3.513 -11.132 12.001 Atomic orbital electron populations 1.21696 0.95332 1.02220 0.99897 1.22626 0.95743 0.98215 0.96882 0.91543 1.21982 0.98221 0.81856 0.94725 1.44499 1.86464 1.02844 0.99158 1.19092 1.42278 0.86013 0.87237 0.90620 1.24763 1.02730 0.96793 0.96557 1.69790 1.57974 1.18619 1.10907 0.86083 0.77555 0.81563 0.80388 1.21721 1.21704 1.20777 1.21279 0.97867 0.92874 0.85943 1.22080 0.98205 0.98361 0.91969 0.90351 1.21554 1.02059 1.00007 0.90298 1.23872 0.81883 0.79699 0.83032 1.90739 1.24859 1.40708 1.83058 1.84562 1.57579 1.68997 1.22565 0.92011 0.92964 0.93990 0.87362 0.97165 0.93838 0.96693 0.95334 0.88038 0.87335 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.13 37.16 0.30 -1.94 16 2 C -0.12 -2.13 3.54 -88.47 -0.31 -2.45 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.16 3.85 5.35 -2.53 -0.01 3.84 16 5 N -0.60 -15.95 3.38 -170.07 -0.57 -16.52 16 6 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 9 N -0.92 -27.26 10.09 55.49 0.56 -26.71 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.15 3.27 5.52 -3.06 -0.02 3.25 16 15 C -0.09 -1.56 2.41 -88.79 -0.21 -1.78 16 16 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 17 C -0.10 -1.40 4.14 -27.88 -0.12 -1.52 16 18 C 0.47 6.79 8.12 36.01 0.29 7.08 16 19 O -0.51 -9.09 15.62 -18.75 -0.29 -9.38 16 20 O -0.52 -5.78 13.42 -39.26 -0.53 -6.30 16 21 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.55 6.76 -51.93 -0.35 0.20 16 24 H 0.11 2.95 5.79 -51.93 -0.30 2.65 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.33 7.76 -51.93 -0.40 -0.07 16 28 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.11 1.44 6.67 -51.93 -0.35 1.10 16 31 H 0.40 2.74 9.10 45.56 0.41 3.16 16 LS Contribution 254.77 15.07 3.84 3.84 Total: -1.00 -32.76 254.77 -5.80 -38.56 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.45 Total: -0.61 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.33 Total: -0.39 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.02 Total: -43.23 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.82 Total: -15.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.76 -5.80 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722644770.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.700 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds