Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.91599 * 2 1 4 4 C 1.54908 * 111.00610 * 123.90076 * 2 1 3 5 5 N 1.47423 * 104.83357 * 81.06566 * 4 2 1 6 6 C 1.36940 * 125.65415 * 204.09288 * 5 4 2 7 7 H 1.07992 * 120.00168 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99699 * 0.04148 * 6 5 4 9 9 N 1.31620 * 119.99982 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99980 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47213 * 90.00302 * 10 8 6 12 12 H 1.48502 * 109.47231 * 210.00023 * 10 8 6 13 13 H 1.48505 * 109.47152 * 330.00073 * 10 8 6 14 14 C 1.47023 * 108.70235 * 24.12824 * 5 4 2 15 15 C 1.54330 * 107.27020 * 358.94091 * 14 5 4 16 16 H 1.09002 * 110.71820 * 96.34389 * 15 14 5 17 17 C 1.52997 * 110.72125 * 219.44185 * 15 14 5 18 18 C 1.50701 * 109.47212 * 293.54566 * 17 15 14 19 19 O 1.20826 * 119.99939 * 0.02562 * 18 17 15 20 20 O 1.34230 * 120.00046 * 179.97438 * 18 17 15 21 21 H 1.08998 * 109.46790 * 183.90193 * 1 2 3 22 22 H 1.09002 * 109.46689 * 303.89748 * 1 2 3 23 23 H 1.08990 * 109.47025 * 63.90129 * 1 2 3 24 24 H 1.09003 * 110.37026 * 322.22738 * 4 2 1 25 25 H 1.08997 * 110.46466 * 199.94937 * 4 2 1 26 26 H 0.96995 * 120.00182 * 179.97438 * 9 8 6 27 27 H 1.08993 * 109.88798 * 239.52640 * 14 5 4 28 28 H 1.09002 * 110.01431 * 118.42977 * 14 5 4 29 29 H 1.09002 * 109.47153 * 173.54568 * 17 15 14 30 30 H 1.09001 * 109.46832 * 53.54759 * 17 15 14 31 31 H 0.96691 * 117.00026 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0140 -2.2158 0.7734 6 6 1.9462 -3.3000 1.6072 7 1 1.8974 -4.2966 1.1942 8 6 1.9398 -3.1179 2.9833 9 7 1.9994 -1.9032 3.4866 10 14 1.8466 -4.5966 4.1207 11 1 3.2197 -5.0640 4.4387 12 1 1.1514 -4.2129 5.3756 13 1 1.0944 -5.6887 3.4522 14 6 2.0286 -2.2646 -0.6960 15 6 2.0861 -0.8079 -1.2022 16 1 3.1130 -0.5169 -1.4239 17 6 1.1965 -0.6272 -2.4338 18 6 1.7612 -1.4228 -3.5824 19 8 2.7712 -2.0684 -3.4313 20 8 1.1414 -1.4149 -4.7731 21 1 -0.3633 -1.0253 0.0699 22 1 -0.3633 0.5732 0.8530 23 1 -0.3633 0.4520 -0.9228 24 1 1.4673 -0.6461 2.0837 25 1 3.1180 -0.5239 1.4043 26 1 1.9946 -1.7759 4.4482 27 1 1.1220 -2.7479 -1.0599 28 1 2.9050 -2.8123 -1.0424 29 1 1.1615 0.4279 -2.7051 30 1 0.1893 -0.9782 -2.2091 31 1 1.5409 -1.9407 -5.4794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722644770.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -98.360520 kcal Electronic energy + Delta-G solvation = -14746.309780 eV Core-core repulsion = 12220.179866 eV Total energy + Delta-G solvation = -2526.129914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35443 -39.55436 -37.00408 -35.26749 -32.57214 -31.79262 -28.40579 -27.28484 -25.64684 -22.84716 -21.60366 -19.94770 -19.12718 -18.66953 -17.58015 -16.96703 -16.71782 -16.24913 -15.57179 -14.65233 -14.30481 -14.07281 -13.74203 -13.37880 -13.25689 -13.10197 -12.90371 -12.56091 -12.49419 -12.39240 -11.90551 -11.79937 -11.59770 -11.37176 -11.23927 -11.15814 -10.73879 -8.86091 -7.77067 -5.20934 1.32026 1.44701 1.46989 1.55747 2.22865 2.49282 3.31334 3.64429 3.79607 3.97874 4.01376 4.34608 4.47333 4.61630 4.67408 4.76143 4.84287 4.87400 5.09124 5.20230 5.33302 5.38451 5.44386 5.52934 5.70962 5.73627 5.86195 6.34150 7.09512 7.12801 7.79976 8.44308 9.24494 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045296 B = 0.008429 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.009906 B = 3321.075516 C = 3690.764773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.096 0.904 4 C 0.155 3.845 5 N -0.624 5.624 6 C -0.242 4.242 7 H 0.073 0.927 8 C -0.065 4.065 9 N -0.946 5.946 10 Si 0.980 3.020 11 H -0.289 1.289 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.145 3.855 15 C -0.075 4.075 16 H 0.072 0.928 17 C -0.096 4.096 18 C 0.480 3.520 19 O -0.552 6.552 20 O -0.511 6.511 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.079 0.921 25 H -0.023 1.023 26 H 0.248 0.752 27 H 0.018 0.982 28 H 0.003 0.997 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 5.506 -13.314 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.115 0.885 4 C 0.030 3.970 5 N -0.350 5.350 6 C -0.371 4.371 7 H 0.091 0.909 8 C -0.258 4.258 9 N -0.596 5.596 10 Si 0.808 3.192 11 H -0.216 1.216 12 H -0.214 1.214 13 H -0.196 1.196 14 C 0.020 3.980 15 C -0.094 4.094 16 H 0.091 0.909 17 C -0.133 4.133 18 C 0.324 3.676 19 O -0.443 6.443 20 O -0.325 6.325 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.096 0.904 25 H -0.005 1.005 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.021 0.979 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.426 5.497 -12.773 14.593 hybrid contribution 0.783 -1.429 0.462 1.693 sum -3.643 4.068 -12.311 13.468 Atomic orbital electron populations 1.21655 0.93449 1.00955 1.02403 1.22514 0.97132 0.98575 0.93763 0.88549 1.21845 0.96060 0.82305 0.96742 1.44809 1.86264 1.03091 1.00851 1.19423 1.42559 0.86885 0.88243 0.90936 1.25604 1.02660 0.99623 0.97894 1.70044 1.58427 1.20345 1.10797 0.85061 0.77408 0.78558 0.78192 1.21606 1.21423 1.19602 1.21378 0.96645 0.96089 0.83898 1.21917 0.99144 0.94633 0.93677 0.90944 1.21505 1.01068 1.02637 0.88105 1.23890 0.81038 0.78728 0.83918 1.90748 1.26964 1.42669 1.83927 1.84497 1.56892 1.69011 1.22083 0.94792 0.93086 0.89168 0.90358 1.00514 0.94258 0.96376 0.97885 0.83762 0.86091 0.71453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.13 71.98 0.59 -3.32 16 2 C -0.10 -3.55 3.54 -9.40 -0.03 -3.58 16 3 H 0.10 2.87 8.14 -2.39 -0.02 2.86 16 4 C 0.16 7.83 5.35 86.86 0.46 8.29 16 5 N -0.62 -33.93 3.38 -691.99 -2.34 -36.27 16 6 C -0.24 -14.31 10.27 84.03 0.86 -13.45 16 7 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 9 N -0.95 -57.50 10.09 21.65 0.22 -57.28 16 10 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 C 0.15 6.56 5.52 86.73 0.48 7.04 16 15 C -0.07 -2.56 2.41 -9.61 -0.02 -2.58 16 16 H 0.07 2.57 8.04 -2.39 -0.02 2.56 16 17 C -0.10 -2.27 4.14 29.85 0.12 -2.15 16 18 C 0.48 12.44 8.12 71.24 0.58 13.02 16 19 O -0.55 -19.25 15.62 21.97 0.34 -18.91 16 20 O -0.51 -9.35 13.42 -51.41 -0.69 -10.04 16 21 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.09 1.91 6.76 -2.39 -0.02 1.90 16 24 H 0.08 4.42 5.79 -2.39 -0.01 4.41 16 25 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 26 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 27 H 0.02 0.81 7.76 -2.39 -0.02 0.79 16 28 H 0.00 0.15 7.68 -2.39 -0.02 0.14 16 29 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.12 2.67 6.67 -2.39 -0.02 2.66 16 31 H 0.42 4.35 9.10 -74.06 -0.67 3.67 16 Total: -1.00 -74.08 254.77 3.52 -70.56 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 0.45 Total: 2.92 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 3.50 Total: -0.09 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -2.12 Total: -93.55 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.35 Total: -28.95 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -74.08 3.52 -70.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722644770.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.799 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds