Wall clock time and date at job start Mon Mar 30 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47054 * 2 1 4 4 C 1.42902 * 114.00590 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55773 * 355.70295 * 4 3 2 6 6 C 1.52992 * 117.50327 * 210.01884 * 4 3 2 7 7 H 1.08997 * 117.52204 * 359.97438 * 6 4 3 8 8 C 1.53006 * 117.50018 * 145.02139 * 6 4 3 9 9 C 1.52992 * 117.50508 * 141.38916 * 4 3 2 10 10 H 1.09000 * 117.52275 * 214.97948 * 9 4 3 11 11 C 1.50700 * 117.49434 * 0.02562 * 9 4 3 12 12 O 1.21293 * 120.00282 * 68.61891 * 11 9 4 13 13 N 1.34777 * 120.00075 * 248.61789 * 11 9 4 14 14 C 1.37104 * 120.00173 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99666 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00001 * 180.27893 * 14 13 11 17 17 N 1.31414 * 119.99893 * 359.72318 * 16 14 13 18 18 Si 1.86801 * 119.99957 * 179.72309 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46780 * 119.99924 * 18 16 14 21 21 H 1.48495 * 109.46909 * 239.99525 * 18 16 14 22 22 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46816 * 299.99729 * 1 2 3 24 24 H 1.08999 * 109.46977 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47680 * 240.00058 * 2 1 3 26 26 H 1.09007 * 109.47424 * 119.99531 * 2 1 3 27 27 H 1.09000 * 109.46929 * 128.62187 * 8 6 4 28 28 H 1.08999 * 109.46980 * 248.61779 * 8 6 4 29 29 H 1.08991 * 109.46907 * 8.61781 * 8 6 4 30 30 H 0.97000 * 120.00140 * 0.02562 * 13 11 9 31 31 H 0.97004 * 119.99542 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4603 0.0006 5 1 3.9772 0.5199 0.0746 6 6 4.0420 2.6875 0.6796 7 1 3.3578 3.4093 1.1256 8 6 5.3732 2.5011 1.4104 9 6 4.0517 2.5730 -0.8461 10 1 5.0064 2.3653 -1.3292 11 6 3.1140 3.4665 -1.6165 12 8 2.3893 4.2387 -1.0252 13 7 3.0808 3.4076 -2.9626 14 6 2.2281 4.2209 -3.6635 15 1 1.5828 4.9084 -3.1370 16 6 2.1896 4.1560 -5.0509 17 7 2.9745 3.3190 -5.6916 18 14 1.0223 5.2585 -6.0055 19 1 0.2522 6.1028 -5.0573 20 1 1.8018 6.1282 -6.9228 21 1 0.0848 4.4206 -6.7954 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 6.0834 3.2544 1.0695 28 1 5.2166 2.6087 2.4837 29 1 5.7678 1.5074 1.1986 30 1 3.6601 2.7898 -3.4355 31 1 2.9479 3.2740 -6.6602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906480681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:50 Heat of formation + Delta-G solvation = -65.951529 kcal Electronic energy + Delta-G solvation = -14258.376184 eV Core-core repulsion = 11733.651629 eV Total energy + Delta-G solvation = -2524.724555 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08969 -37.22676 -35.28214 -33.71495 -31.08258 -30.72246 -28.19032 -25.22782 -22.68216 -22.39699 -20.46267 -18.86557 -17.79627 -16.85045 -15.33704 -15.20924 -14.87725 -14.34618 -13.84152 -13.42939 -13.03107 -12.78207 -12.56499 -12.20664 -12.10865 -11.97886 -11.49353 -11.15035 -11.04663 -10.90343 -10.56232 -10.29318 -10.16608 -9.66073 -9.40317 -8.73500 -8.25860 -7.86607 -6.33874 -3.73254 3.20069 3.30842 3.38946 3.70011 3.77103 4.22392 4.44206 4.86526 5.13181 5.20419 5.27486 5.39784 5.47655 5.50223 5.54080 5.62085 5.80214 5.86123 5.95435 6.03653 6.09941 6.20007 6.33039 6.49679 6.71968 7.60502 7.63102 8.15989 8.71865 9.27064 9.65984 10.19221 10.84431 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.008550 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.969399 B = 3274.059003 C = 3816.101649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.339 6.339 4 C 0.040 3.960 5 H 0.108 0.892 6 C -0.132 4.132 7 H 0.119 0.881 8 C -0.118 4.118 9 C -0.176 4.176 10 H 0.114 0.886 11 C 0.482 3.518 12 O -0.587 6.587 13 N -0.562 5.562 14 C -0.294 4.294 15 H 0.102 0.898 16 C 0.020 3.980 17 N -0.904 5.904 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -7.649 9.012 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.257 6.257 4 C -0.019 4.019 5 H 0.126 0.874 6 C -0.151 4.151 7 H 0.137 0.863 8 C -0.175 4.175 9 C -0.198 4.198 10 H 0.132 0.868 11 C 0.267 3.733 12 O -0.472 6.472 13 N -0.197 5.197 14 C -0.423 4.423 15 H 0.120 0.880 16 C -0.181 4.181 17 N -0.546 5.546 18 Si 0.755 3.245 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.791 -6.992 9.185 11.682 hybrid contribution 0.003 -0.134 -1.014 1.023 sum 1.794 -7.126 8.171 10.990 Atomic orbital electron populations 1.21721 0.93860 1.01725 1.03508 1.22492 0.95691 0.84201 0.99556 1.88051 1.18289 1.25471 1.93849 1.22806 0.82463 0.93075 1.03537 0.87435 1.22708 0.98724 1.00469 0.93166 0.86253 1.21357 0.94975 1.01433 0.99752 1.22896 1.00804 1.02042 0.94026 0.86844 1.18757 0.85914 0.85886 0.82710 1.90494 1.45481 1.42244 1.68979 1.41772 1.37142 1.36506 1.04273 1.19767 1.16930 1.16849 0.88776 0.87972 1.25242 0.98202 0.97909 0.96764 1.69633 1.38959 1.36958 1.09015 0.85816 0.79745 0.79574 0.79316 1.19250 1.20800 1.20819 0.91424 0.91993 0.91446 0.93387 0.93779 0.91838 0.92129 0.92783 0.77522 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 37.16 0.38 -1.65 16 2 C 0.06 0.84 6.53 37.16 0.24 1.08 16 3 O -0.34 -6.57 10.01 -35.23 -0.35 -6.93 16 4 C 0.04 0.69 6.05 -26.74 -0.16 0.53 16 5 H 0.11 1.43 7.83 -51.93 -0.41 1.03 16 6 C -0.13 -2.23 5.87 -90.62 -0.53 -2.76 16 7 H 0.12 2.33 7.67 -51.93 -0.40 1.94 16 8 C -0.12 -1.45 10.19 37.16 0.38 -1.07 16 9 C -0.18 -3.42 5.91 -91.78 -0.54 -3.96 16 10 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 11 C 0.48 12.37 7.08 -10.98 -0.08 12.29 16 12 O -0.59 -17.22 15.83 5.55 0.09 -17.14 16 13 N -0.56 -15.20 5.29 -10.96 -0.06 -15.26 16 14 C -0.29 -8.59 9.68 -14.93 -0.14 -8.73 16 15 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 16 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 17 N -0.90 -25.41 13.05 55.50 0.72 -24.68 16 18 Si 0.93 21.75 29.55 -169.99 -5.02 16.72 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 30 H 0.39 10.15 7.90 -40.82 -0.32 9.83 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 274.04 15.07 4.13 4.13 Total: -1.00 -33.34 274.04 -5.47 -38.81 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.43 Total: 8.16 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.55 Total: -3.82 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.67 Total: -39.95 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.27 Total: -24.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.34 -5.47 -38.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906480681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.138 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds